e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/lib/vegaInfo.c src/hg/lib/vegaInfo.c
index 04affd7..643ef5d 100644
--- src/hg/lib/vegaInfo.c
+++ src/hg/lib/vegaInfo.c
@@ -1,129 +1,132 @@
 /* vegaInfo.c was originally generated by the autoSql program, which also 
  * generated vegaInfo.h and vegaInfo.sql.  This module links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "vegaInfo.h"
 
 
 void vegaInfoStaticLoad(char **row, struct vegaInfo *ret)
 /* Load a row from vegaInfo table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->transcriptId = row[0];
 ret->otterId = row[1];
 ret->geneId = row[2];
 ret->method = row[3];
 ret->geneDesc = row[4];
 }
 
 struct vegaInfo *vegaInfoLoad(char **row)
 /* Load a vegaInfo from row fetched with select * from vegaInfo
  * from database.  Dispose of this with vegaInfoFree(). */
 {
 struct vegaInfo *ret;
 
 AllocVar(ret);
 ret->transcriptId = cloneString(row[0]);
 ret->otterId = cloneString(row[1]);
 ret->geneId = cloneString(row[2]);
 ret->method = cloneString(row[3]);
 ret->geneDesc = cloneString(row[4]);
 return ret;
 }
 
 struct vegaInfo *vegaInfoLoadAll(char *fileName) 
 /* Load all vegaInfo from a tab-separated file.
  * Dispose of this with vegaInfoFreeList(). */
 {
 struct vegaInfo *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[5];
 
 while (lineFileRow(lf, row))
     {
     el = vegaInfoLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct vegaInfo *vegaInfoCommaIn(char **pS, struct vegaInfo *ret)
 /* Create a vegaInfo out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new vegaInfo */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->transcriptId = sqlStringComma(&s);
 ret->otterId = sqlStringComma(&s);
 ret->geneId = sqlStringComma(&s);
 ret->method = sqlStringComma(&s);
 ret->geneDesc = sqlStringComma(&s);
 *pS = s;
 return ret;
 }
 
 void vegaInfoFree(struct vegaInfo **pEl)
 /* Free a single dynamically allocated vegaInfo such as created
  * with vegaInfoLoad(). */
 {
 struct vegaInfo *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->transcriptId);
 freeMem(el->otterId);
 freeMem(el->geneId);
 freeMem(el->method);
 freeMem(el->geneDesc);
 freez(pEl);
 }
 
 void vegaInfoFreeList(struct vegaInfo **pList)
 /* Free a list of dynamically allocated vegaInfo's */
 {
 struct vegaInfo *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     vegaInfoFree(&el);
     }
 *pList = NULL;
 }
 
 void vegaInfoOutput(struct vegaInfo *el, FILE *f, char sep, char lastSep) 
 /* Print out vegaInfo.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->transcriptId);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->otterId);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->geneId);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->method);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->geneDesc);
 if (sep == ',') fputc('"',f);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */