e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/lib/wiggle.c src/hg/lib/wiggle.c
index f1b5307..0820f52 100644
--- src/hg/lib/wiggle.c
+++ src/hg/lib/wiggle.c
@@ -1,180 +1,183 @@
 /* wiggle.c was originally generated by the autoSql program, which also 
  * generated wiggle.h and wiggle.sql.  This module links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2014 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "wiggle.h"
 
 
 void wiggleStaticLoad(char **row, struct wiggle *ret)
 /* Load a row from wiggle table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 ret->chrom = row[0];
 ret->chromStart = sqlUnsigned(row[1]);
 ret->chromEnd = sqlUnsigned(row[2]);
 ret->name = row[3];
 ret->span = sqlUnsigned(row[4]);
 ret->count = sqlUnsigned(row[5]);
 ret->offset = sqlUnsigned(row[6]);
 ret->file = row[7];
 ret->lowerLimit = atof(row[8]);
 ret->dataRange = atof(row[9]);
 ret->validCount = sqlUnsigned(row[10]);
 ret->sumData = atof(row[11]);
 ret->sumSquares = atof(row[12]);
 }
 
 struct wiggle *wiggleLoad(char **row)
 /* Load a wiggle from row fetched with select * from wiggle
  * from database.  Dispose of this with wiggleFree(). */
 {
 struct wiggle *ret;
 
 AllocVar(ret);
 ret->chrom = cloneString(row[0]);
 ret->chromStart = sqlUnsigned(row[1]);
 ret->chromEnd = sqlUnsigned(row[2]);
 ret->name = cloneString(row[3]);
 ret->span = sqlUnsigned(row[4]);
 ret->count = sqlUnsigned(row[5]);
 ret->offset = sqlUnsigned(row[6]);
 ret->file = cloneString(row[7]);
 ret->lowerLimit = atof(row[8]);
 ret->dataRange = atof(row[9]);
 ret->validCount = sqlUnsigned(row[10]);
 ret->sumData = atof(row[11]);
 ret->sumSquares = atof(row[12]);
 return ret;
 }
 
 struct wiggle *wiggleLoadAll(char *fileName) 
 /* Load all wiggle from a whitespace-separated file.
  * Dispose of this with wiggleFreeList(). */
 {
 struct wiggle *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[13];
 
 while (lineFileRow(lf, row))
     {
     el = wiggleLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct wiggle *wiggleLoadAllByChar(char *fileName, char chopper) 
 /* Load all wiggle from a chopper separated file.
  * Dispose of this with wiggleFreeList(). */
 {
 struct wiggle *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[13];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = wiggleLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct wiggle *wiggleCommaIn(char **pS, struct wiggle *ret)
 /* Create a wiggle out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new wiggle */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->chrom = sqlStringComma(&s);
 ret->chromStart = sqlUnsignedComma(&s);
 ret->chromEnd = sqlUnsignedComma(&s);
 ret->name = sqlStringComma(&s);
 ret->span = sqlUnsignedComma(&s);
 ret->count = sqlUnsignedComma(&s);
 ret->offset = sqlUnsignedComma(&s);
 ret->file = sqlStringComma(&s);
 ret->lowerLimit = sqlDoubleComma(&s);
 ret->dataRange = sqlDoubleComma(&s);
 ret->validCount = sqlUnsignedComma(&s);
 ret->sumData = sqlDoubleComma(&s);
 ret->sumSquares = sqlDoubleComma(&s);
 *pS = s;
 return ret;
 }
 
 void wiggleFree(struct wiggle **pEl)
 /* Free a single dynamically allocated wiggle such as created
  * with wiggleLoad(). */
 {
 struct wiggle *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->chrom);
 freeMem(el->name);
 freeMem(el->file);
 freez(pEl);
 }
 
 void wiggleFreeList(struct wiggle **pList)
 /* Free a list of dynamically allocated wiggle's */
 {
 struct wiggle *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     wiggleFree(&el);
     }
 *pList = NULL;
 }
 
 void wiggleOutput(struct wiggle *el, FILE *f, char sep, char lastSep) 
 /* Print out wiggle.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->chrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->chromStart);
 fputc(sep,f);
 fprintf(f, "%u", el->chromEnd);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->name);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->span);
 fputc(sep,f);
 fprintf(f, "%u", el->count);
 fputc(sep,f);
 fprintf(f, "%u", el->offset);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->file);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%f", el->lowerLimit);
 fputc(sep,f);
 fprintf(f, "%f", el->dataRange);
 fputc(sep,f);
 fprintf(f, "%u", el->validCount);
 fputc(sep,f);
 fprintf(f, "%f", el->sumData);
 fputc(sep,f);
 fprintf(f, "%f", el->sumSquares);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */