e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/hg/sageVisCGI/rosChr22Dat.h src/hg/sageVisCGI/rosChr22Dat.h
index ecbafa0..08f5bbc 100644
--- src/hg/sageVisCGI/rosChr22Dat.h
+++ src/hg/sageVisCGI/rosChr22Dat.h
@@ -1,124 +1,127 @@
 /* rosChr22Dat.h was originally generated by the autoSql program, which also 
  * generated rosChr22Dat.c and rosChr22Dat.sql.  This header links the database and
  * the RAM representation of objects. */
 
+/* Copyright (C) 2005 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
+
 #ifndef ROSCHR22DAT_H
 #define ROSCHR22DAT_H
 
 struct rosChr22Dat
 /* Detailed Expression Data Record For Rosetta Chr 22 Data */
     {
     struct rosChr22Dat *next;  /* Next in singly linked list. */
     char *chrom;	/* Chromosome Name */
     unsigned chromStart;	/* Start in Chromosome */
     unsigned chromEnd;	/* End in Chromosome */
     char *name;	/* human name */
     int probeType;	/* Whether probes came from type 1 array or type 2 */
     int labelType;	/* 1 equals standard labeling, 2 equals reverse labeling */
     char *strand;	/* + or - */
     char *expName;	/* Experiment Name */
     char *fileName;	/* File that data comes from */
     char *exonName;	/* exon identifier from Rosetta */
     char *controlType;	/* true if control gene, false otherwise */
     int probeID;	/* featureNumber */
     float nSigCy3;	/* normalized signal in Cy3 */
     float rSigCy3;	/* raw signal in Cy3 */
     int pixelsCy3;	/* number of pixels in Cy3 */
     float bgrdCy3;	/* background value of Cy3 */
     float nSigCy5;	/* normalized signal in Cy5 */
     float rSigCy5;	/* raw signal in Cy5 */
     int pixelsCy5;	/* number of pixels in Cy5 */
     float bgrdCy5;	/* background value of Cy5 */
     float logRatio;	/* log ratio of hybridization */
     float logError;	/* uncertainty of log ratio in Rosetta error model */
     float xdev;	/* Rosetta's error model value */
     float pval;	/* P-value in Rosetta's Error Model */
     };
 
 void rosChr22DatStaticLoad(char **row, struct rosChr22Dat *ret);
 /* Load a row from rosChr22Dat table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 
 struct rosChr22Dat *rosChr22DatLoad(char **row);
 /* Load a rosChr22Dat from row fetched with select * from rosChr22Dat
  * from database.  Dispose of this with rosChr22DatFree(). */
 
 struct rosChr22Dat *rosChr22DatLoadAll(char *fileName);
 /* Load all rosChr22Dat from a tab-separated file.
  * Dispose of this with rosChr22DatFreeList(). */
 
 struct rosChr22Dat *rosChr22DatCommaIn(char **pS, struct rosChr22Dat *ret);
 /* Create a rosChr22Dat out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new rosChr22Dat */
 
 void rosChr22DatFree(struct rosChr22Dat **pEl);
 /* Free a single dynamically allocated rosChr22Dat such as created
  * with rosChr22DatLoad(). */
 
 void rosChr22DatFreeList(struct rosChr22Dat **pList);
 /* Free a list of dynamically allocated rosChr22Dat's */
 
 void rosChr22DatOutput(struct rosChr22Dat *el, FILE *f, char sep, char lastSep);
 /* Print out rosChr22Dat.  Separate fields with sep. Follow last field with lastSep. */
 
 #define rosChr22DatTabOut(el,f) rosChr22DatOutput(el,f,'\t','\n');
 /* Print out rosChr22Dat as a line in a tab-separated file. */
 
 #define rosChr22DatCommaOut(el,f) rosChr22DatOutput(el,f,',',',');
 /* Print out rosChr22Dat as a comma separated list including final comma. */
 
 /**
  * rcdInitExpTable - creates hashes to look up experiment names
  * by a number and using an experiment name to get a number. 
  * This is useful for web scripts and calling things by other than their
  * full name.
  */
 void rcdInitExpTable();
 
 /**
  * rcdLookUpExpNumber - looks up an experiments representative number
  * using its name. Make sure to call rcdInitExpTable() before calling this
  * function.
  * @param char * name - experiment to look up, i.e. "Pool_vs_Colorectal_Adenocarcinoma"
  * @return int - experiment number, or -1 if not present, or -2 if rcdInitExpTable hasn't been called
  */
 int rcdLookUpExpNumber(char *name);
 
 /**
  * rcdLookUpExpName - looks up the name of an experiment using its
  * representative number. Make sure to call rcdInitExpTable() before calling this
  * function.
  * @param int - experiment name to lookup, should be between 0-68
  * @return char * - name of the experiment or NULL if not found. Remember to free when done.
  */
 char *rcdLookUpExpName(int expNum);
 
 /**
  * rcdLookUpGeneName - looks up the name of an experiment using its
  * representative number. Make sure to call rcdInitExpTable() before calling this
  * function.
  * @param int - gene name to lookup
  * @return char * - name of the gene or NULL if not found. Remember to free when done.
  */
 char *rcdLookUpGeneName(int geneNum);
 
 /**
  * rcdGetNumExp - returns the number of experiments that can be provided
  * by rcdLookUpExpName().
  * @return int - the number of experiments for use like <code>for(i=0;i<rcdGetNumExp;i++)</code>
  */
 int rcdGetNumExp();
 
 /**
  * rcdGetNumGenes - returns the number of experiments that can be provided
  * by rcdLookUpGeneName().
  * @return int - the number of experiments for use like <code>for(i=0;i<rcdGetNumGenes();i++)</code>
  */
 int rcdGetNumGenes();
 
 
 
 
 #endif /* ROSCHR22DAT_H */