e70152e44cc66cc599ff6b699eb8adc07f3e656a
kent
  Sat May 24 21:09:34 2014 -0700
Adding Copyright NNNN Regents of the University of California to all files I believe with reasonable certainty were developed under UCSC employ or as part of Genome Browser copyright assignment.
diff --git src/utils/faToFastq/faToFastq.c src/utils/faToFastq/faToFastq.c
index 0af0261..ed77e72 100644
--- src/utils/faToFastq/faToFastq.c
+++ src/utils/faToFastq/faToFastq.c
@@ -1,60 +1,63 @@
 /* faToFastq - Convert fa to fastq format, just faking quality values.. */
+
+/* Copyright (C) 2011 The Regents of the University of California 
+ * See README in this or parent directory for licensing information. */
 #include "common.h"
 #include "linefile.h"
 #include "hash.h"
 #include "options.h"
 #include "fa.h"
 
 
 void usage()
 /* Explain usage and exit. */
 {
 errAbort(
   "faToFastq - Convert fa to fastq format, just faking quality values.\n"
   "usage:\n"
   "   faToFastq in.fa out.fastq\n"
   "options:\n"
   "   -qual=X quality letter to use.  Default is '<' which is good I think....\n"
   );
 }
 
 char qualLetter = '<';
 
 static struct optionSpec options[] = {
    {"qual", OPTION_STRING},
    {NULL, 0},
 };
 
 void faToFastq(char *inFa, char *outFastq)
 /* faToFastq - Convert fa to fastq format, just faking quality values.. */
 {
 struct lineFile *lf = lineFileOpen(inFa, TRUE);
 FILE *f = mustOpen(outFastq, "w");
 DNA *dna;
 int size;
 char *name;
 while (faMixedSpeedReadNext(lf, &dna, &size, &name))
     {
     fprintf(f, "@%s\n", name);
     fprintf(f, "%s\n", dna);
     fprintf(f, "+\n");
     int i;
     for (i=0; i<size; ++i)
         fputc(qualLetter, f);
     fputc('\n', f);
     }
 carefulClose(&f);
 }
 
 int main(int argc, char *argv[])
 /* Process command line. */
 {
 optionInit(&argc, argv, options);
 if (argc != 3)
     usage();
 char *qual = optionVal("qual", NULL);
 if (qual != NULL)
     qualLetter = qual[0];
 faToFastq(argv[1], argv[2]);
 return 0;
 }