0d57f2fbbe996a2b3fd88d634690b32fb204df2b
kuhn
  Fri May 23 14:20:08 2014 -0700
made utils to convert BAM files to bedGraph and bigWig, using kent tools and bedTools
diff --git src/utils/qa/makefile src/utils/qa/makefile
index c9d4782..4eaba50 100644
--- src/utils/qa/makefile
+++ src/utils/qa/makefile
@@ -1,27 +1,29 @@
 include ../../inc/common.mk
 # ${SCRIPTS} is ${HOME}/bin/scripts (defined in kent/src/inc/common.mk)
 # to install in /cluster/bin/scripts/, run (in this directory):
 # make SCRIPTS=/cluster/bin/scripts
 
 install:
 	@echo Reminder: is your sandbox up to date?
 	cp -p --remove-destination 2bitCompare             ${SCRIPTS}
 	cp -p --remove-destination activeGenbank.csh       ${SCRIPTS}
 	cp -p --remove-destination alertBqueue.csh         ${SCRIPTS}
 	cp -p --remove-destination allowTraffic.csh        ${SCRIPTS}
 	cp -p --remove-destination backupCentral.csh       ${SCRIPTS}
+	cp -p --remove-destination bamToBedGraph.csh       ${SCRIPTS}
+	cp -p --remove-destination bamToBigWig.csh         ${SCRIPTS}
 	cp -p --remove-destination bigPush.csh             ${SCRIPTS}
 	cp -p --remove-destination blatPing.csh            ${SCRIPTS}
 	cp -p --remove-destination browserUsage.csh        ${SCRIPTS}
 	cp -p --remove-destination catchBot.csh            ${SCRIPTS}
 	cp -p --remove-destination chain.csh               ${SCRIPTS}
 	cp -p --remove-destination chain2.csh              ${SCRIPTS}
 	cp -p --remove-destination chainNetTrio.csh        ${SCRIPTS}
 	cp -p --remove-destination checkAllStaticLinks.csh ${SCRIPTS}
 	cp -p --remove-destination checkBOT.csh            ${SCRIPTS}
 	cp -p --remove-destination checkCoverage.csh       ${SCRIPTS}
 	cp -p --remove-destination checkEncodeRegions.csh  ${SCRIPTS}
 	cp -p --remove-destination checkGbdbDiffs.csh      ${SCRIPTS}
 	cp -p --remove-destination checkGenomeMysql        ${SCRIPTS}
 	cp -p --remove-destination checkHitter.csh         ${SCRIPTS}
 	cp -p --remove-destination checkMachineName.csh    ${SCRIPTS}