Commits for hiram
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v301_preview to v301_preview2 (2014-05-26 to 2014-06-02) v301
- raising the bar to 130 species refs #10272
- src/hg/utils/phyloTrees/130way.dissect.txt - lines changed 1813, context: html, text, full: html, text
- src/hg/utils/phyloTrees/130wayChainNet.pl - lines changed 212, context: html, text, full: html, text
- catching up with chain net definitions refs #13300
- src/hg/makeDb/trackDb/trackDb.chainNet.birds.ra - lines changed 530, context: html, text, full: html, text
- src/hg/makeDb/trackDb/trackDb.chainNet.primates.ra - lines changed 176, context: html, text, full: html, text
- catching up chain net tracks refs #13300
- src/hg/makeDb/trackDb/trackDb.chainNet.afrotheria.ra - lines changed 176, context: html, text, full: html, text
- src/hg/makeDb/trackDb/trackDb.chainNet.birds.ra - lines changed 126, context: html, text, full: html, text
- src/hg/makeDb/trackDb/trackDb.chainNet.euarchontoglires.ra - lines changed 353, context: html, text, full: html, text
- src/hg/makeDb/trackDb/trackDb.chainNet.fish.ra - lines changed 471, context: html, text, full: html, text
- src/hg/makeDb/trackDb/trackDb.chainNet.laurasiatheria.ra - lines changed 884, context: html, text, full: html, text
- src/hg/makeDb/trackDb/trackDb.chainNet.primates.ra - lines changed 59, context: html, text, full: html, text
- src/hg/makeDb/trackDb/trackDb.chainNet.sarcopterygii.ra - lines changed 353, context: html, text, full: html, text
- src/hg/makeDb/trackDb/trackDb.ra - lines changed 9, context: html, text, full: html, text
- adding sperm whale refs #10272
- src/hg/utils/phyloTrees/131way.commonNames.nh - lines changed 131, context: html, text, full: html, text
- src/hg/utils/phyloTrees/131way.dissect.txt - lines changed 1827, context: html, text, full: html, text
- src/hg/utils/phyloTrees/131way.nh - lines changed 131, context: html, text, full: html, text
- src/hg/utils/phyloTrees/131way.scientificNames.nh - lines changed 131, context: html, text, full: html, text
- src/hg/utils/phyloTrees/131wayChainNet.pl - lines changed 212, context: html, text, full: html, text
- src/hg/utils/phyloTrees/commonNames.sh - lines changed 1, context: html, text, full: html, text
- src/hg/utils/phyloTrees/makefile - lines changed 7, context: html, text, full: html, text
- src/hg/utils/phyloTrees/scientificNames.sh - lines changed 1, context: html, text, full: html, text
- adding chlSab1 - Green monkey - Chlorocebus sabaeus and phyCat1 - Sperm whale - Physeter catodon refs #13300
- src/hg/makeDb/trackDb/trackDb.chainNet.laurasiatheria.ra - lines changed 59, context: html, text, full: html, text
- src/hg/makeDb/trackDb/trackDb.chainNet.primates.ra - lines changed 59, context: html, text, full: html, text
- adding panTro4 and monDom5 lastz chain net refs #13300
- src/hg/makeDb/doc/hg38.txt - lines changed 138, context: html, text, full: html, text
- run up rheMac2 mm10 liftOver per user request refs #13319
- src/hg/makeDb/doc/mm10.txt - lines changed 12, context: html, text, full: html, text
- adding in Arctic lamprey letCam1 refs #13300
- src/hg/makeDb/trackDb/human/chainNetVertebrate.ra - lines changed 17, context: html, text, full: html, text
- adding panTro4 and monDom5 lastz chain net refs #13300
- src/hg/makeDb/doc/hg38.txt - lines changed 30, context: html, text, full: html, text
- correctly md5sum the syntenic net downloads refs #13300
- src/hg/utils/automation/doBlastzChainNet.pl - lines changed 3, context: html, text, full: html, text
- correctly parsing new style Q matrix settings refs #13300
- src/hg/utils/phyloTrees/findScores.pl - lines changed 1, context: html, text, full: html, text
- catching up chain net track definitions refs #10272
- src/hg/makeDb/trackDb/trackDb.chainNet.afrotheria.ra - lines changed 118, context: html, text, full: html, text
- src/hg/makeDb/trackDb/trackDb.chainNet.laurasiatheria.ra - lines changed 177, context: html, text, full: html, text
- src/hg/makeDb/trackDb/trackDb.chainNet.mammal.ra - lines changed 176, context: html, text, full: html, text
- src/hg/makeDb/trackDb/trackDb.chainNet.primates.ra - lines changed 59, context: html, text, full: html, text
- src/hg/makeDb/trackDb/trackDb.chainNet.sarcopterygii.ra - lines changed 118, context: html, text, full: html, text
- src/hg/makeDb/trackDb/trackDb.ra - lines changed 1, context: html, text, full: html, text
- adding eriEur2 chain net refs #10272
- src/hg/makeDb/trackDb/trackDb.chainNet.laurasiatheria.ra - lines changed 59, context: html, text, full: html, text
- unmasked CpG island track contruction refs #1268
- src/hg/makeDb/doc/echTel2.txt - lines changed 15, context: html, text, full: html, text
- src/hg/makeDb/doc/fr1.txt - lines changed 27, context: html, text, full: html, text
- src/hg/makeDb/doc/galGal2.txt - lines changed 28, context: html, text, full: html, text
- src/hg/makeDb/doc/hg16.txt - lines changed 26, context: html, text, full: html, text
- src/hg/makeDb/doc/mm9.txt - lines changed 16, context: html, text, full: html, text
- src/hg/makeDb/doc/panTro1.txt - lines changed 27, context: html, text, full: html, text
- src/hg/makeDb/doc/rn3.txt - lines changed 33, context: html, text, full: html, text
- lift over to ochPri3 refs #9347
- src/hg/makeDb/doc/ochPri2.txt - lines changed 8, context: html, text, full: html, text
- correct directory name for cytoBand refs #11681
- src/hg/makeDb/doc/hg38.txt - lines changed 2, context: html, text, full: html, text
- v301 preview2 refs #13189
- src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text
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