b121f5d9384a9ac0372ae51cd431a130126ff89b kate Fri May 30 14:41:55 2014 -0700 Removing unneeded file schema code. refs #13230 diff --git src/hg/inc/bed5Sources.h src/hg/inc/bed5Sources.h deleted file mode 100644 index 10e3ed6..0000000 --- src/hg/inc/bed5Sources.h +++ /dev/null @@ -1,82 +0,0 @@ -/* bed5Sources.h was originally generated by the autoSql program, which also - * generated bed5Sources.c and bed5Sources.sql. This header links the database and - * the RAM representation of objects. */ - -#ifndef BED5SOURCES_H -#define BED5SOURCES_H - -#include "jksql.h" -#define BED5SOURCES_NUM_COLS 9 - -extern char *bed5SourcesCommaSepFieldNames; - -struct bed5Sources -/* BED5+ with a float data value field and a list of sources for combined data */ - { - struct bed5Sources *next; /* Next in singly linked list. */ - unsigned bin; /* Bin number for browser speedup */ - char *chrom; /* Reference sequence chromosome or scaffold */ - unsigned chromStart; /* Start position in chromosome */ - unsigned chromEnd; /* End position in chromosome */ - char *name; /* Name of item */ - unsigned score; /* Display score (0-1000) */ - float floatScore; /* Data score (signal, p-value, z-score, etc.) */ - unsigned sourceCount; /* Number of sources contributing to this item */ - unsigned *sourceIds; /* Comma separated list of source ids */ - }; - -struct bed5Sources *bed5SourcesLoadByQuery(struct sqlConnection *conn, char *query); -/* Load all bed5Sources from table that satisfy the query given. - * Where query is of the form 'select * from example where something=something' - * or 'select example.* from example, anotherTable where example.something = - * anotherTable.something'. - * Dispose of this with bed5SourcesFreeList(). */ - -void bed5SourcesSaveToDb(struct sqlConnection *conn, struct bed5Sources *el, char *tableName, int updateSize); -/* Save bed5Sources as a row to the table specified by tableName. - * As blob fields may be arbitrary size updateSize specifies the approx size - * of a string that would contain the entire query. Arrays of native types are - * converted to comma separated strings and loaded as such, User defined types are - * inserted as NULL. This function automatically escapes quoted strings for mysql. */ - -struct bed5Sources *bed5SourcesLoad(char **row); -/* Load a bed5Sources from row fetched with select * from bed5Sources - * from database. Dispose of this with bed5SourcesFree(). */ - -struct bed5Sources *bed5SourcesLoadAll(char *fileName); -/* Load all bed5Sources from whitespace-separated file. - * Dispose of this with bed5SourcesFreeList(). */ - -struct bed5Sources *bed5SourcesLoadAllByChar(char *fileName, char chopper); -/* Load all bed5Sources from chopper separated file. - * Dispose of this with bed5SourcesFreeList(). */ - -#define bed5SourcesLoadAllByTab(a) bed5SourcesLoadAllByChar(a, '\t'); -/* Load all bed5Sources from tab separated file. - * Dispose of this with bed5SourcesFreeList(). */ - -struct bed5Sources *bed5SourcesCommaIn(char **pS, struct bed5Sources *ret); -/* Create a bed5Sources out of a comma separated string. - * This will fill in ret if non-null, otherwise will - * return a new bed5Sources */ - -void bed5SourcesFree(struct bed5Sources **pEl); -/* Free a single dynamically allocated bed5Sources such as created - * with bed5SourcesLoad(). */ - -void bed5SourcesFreeList(struct bed5Sources **pList); -/* Free a list of dynamically allocated bed5Sources's */ - -void bed5SourcesOutput(struct bed5Sources *el, FILE *f, char sep, char lastSep); -/* Print out bed5Sources. Separate fields with sep. Follow last field with lastSep. */ - -#define bed5SourcesTabOut(el,f) bed5SourcesOutput(el,f,'\t','\n'); -/* Print out bed5Sources as a line in a tab-separated file. */ - -#define bed5SourcesCommaOut(el,f) bed5SourcesOutput(el,f,',',','); -/* Print out bed5Sources as a comma separated list including final comma. */ - -/* -------------------------------- End autoSql Generated Code -------------------------------- */ - -#endif /* BED5SOURCES_H */ -