b121f5d9384a9ac0372ae51cd431a130126ff89b
kate
  Fri May 30 14:41:55 2014 -0700
Removing unneeded file schema code.  refs #13230
diff --git src/hg/lib/bed5Sources.c src/hg/lib/bed5Sources.c
deleted file mode 100644
index dbc4506..0000000
--- src/hg/lib/bed5Sources.c
+++ /dev/null
@@ -1,208 +0,0 @@
-/* bed5Sources.c was originally generated by the autoSql program, which also 
- * generated bed5Sources.h and bed5Sources.sql.  This module links the database and
- * the RAM representation of objects. */
-
-#include "common.h"
-#include "linefile.h"
-#include "dystring.h"
-#include "jksql.h"
-#include "bed5Sources.h"
-
-
-
-char *bed5SourcesCommaSepFieldNames = "bin,chrom,chromStart,chromEnd,name,score,floatScore,sourceCount,sourceIds";
-
-struct bed5Sources *bed5SourcesLoadByQuery(struct sqlConnection *conn, char *query)
-/* Load all bed5Sources from table that satisfy the query given.  
- * Where query is of the form 'select * from example where something=something'
- * or 'select example.* from example, anotherTable where example.something = 
- * anotherTable.something'.
- * Dispose of this with bed5SourcesFreeList(). */
-{
-struct bed5Sources *list = NULL, *el;
-struct sqlResult *sr;
-char **row;
-
-sr = sqlGetResult(conn, query);
-while ((row = sqlNextRow(sr)) != NULL)
-    {
-    el = bed5SourcesLoad(row);
-    slAddHead(&list, el);
-    }
-slReverse(&list);
-sqlFreeResult(&sr);
-return list;
-}
-
-void bed5SourcesSaveToDb(struct sqlConnection *conn, struct bed5Sources *el, char *tableName, int updateSize)
-/* Save bed5Sources as a row to the table specified by tableName. 
- * As blob fields may be arbitrary size updateSize specifies the approx size
- * of a string that would contain the entire query. Arrays of native types are
- * converted to comma separated strings and loaded as such, User defined types are
- * inserted as NULL. This function automatically escapes quoted strings for mysql. */
-{
-struct dyString *update = newDyString(updateSize);
-char  *sourceIdsArray;
-sourceIdsArray = sqlUnsignedArrayToString(el->sourceIds, el->sourceCount);
-sqlDyStringPrintf(update, "insert into %s values ( %u,'%s',%u,%u,'%s',%u,%g,%u,'%s')", 
-	tableName,  el->bin,  el->chrom,  el->chromStart,  el->chromEnd,  el->name,  el->score,  el->floatScore,  el->sourceCount,  sourceIdsArray );
-sqlUpdate(conn, update->string);
-freeDyString(&update);
-freez(&sourceIdsArray);
-}
-
-struct bed5Sources *bed5SourcesLoad(char **row)
-/* Load a bed5Sources from row fetched with select * from bed5Sources
- * from database.  Dispose of this with bed5SourcesFree(). */
-{
-struct bed5Sources *ret;
-
-AllocVar(ret);
-ret->sourceCount = sqlUnsigned(row[7]);
-ret->bin = sqlUnsigned(row[0]);
-ret->chrom = cloneString(row[1]);
-ret->chromStart = sqlUnsigned(row[2]);
-ret->chromEnd = sqlUnsigned(row[3]);
-ret->name = cloneString(row[4]);
-ret->score = sqlUnsigned(row[5]);
-ret->floatScore = sqlFloat(row[6]);
-{
-int sizeOne;
-sqlUnsignedDynamicArray(row[8], &ret->sourceIds, &sizeOne);
-assert(sizeOne == ret->sourceCount);
-}
-return ret;
-}
-
-struct bed5Sources *bed5SourcesLoadAll(char *fileName) 
-/* Load all bed5Sources from a whitespace-separated file.
- * Dispose of this with bed5SourcesFreeList(). */
-{
-struct bed5Sources *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[9];
-
-while (lineFileRow(lf, row))
-    {
-    el = bed5SourcesLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct bed5Sources *bed5SourcesLoadAllByChar(char *fileName, char chopper) 
-/* Load all bed5Sources from a chopper separated file.
- * Dispose of this with bed5SourcesFreeList(). */
-{
-struct bed5Sources *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[9];
-
-while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
-    {
-    el = bed5SourcesLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct bed5Sources *bed5SourcesCommaIn(char **pS, struct bed5Sources *ret)
-/* Create a bed5Sources out of a comma separated string. 
- * This will fill in ret if non-null, otherwise will
- * return a new bed5Sources */
-{
-char *s = *pS;
-
-if (ret == NULL)
-    AllocVar(ret);
-ret->bin = sqlUnsignedComma(&s);
-ret->chrom = sqlStringComma(&s);
-ret->chromStart = sqlUnsignedComma(&s);
-ret->chromEnd = sqlUnsignedComma(&s);
-ret->name = sqlStringComma(&s);
-ret->score = sqlUnsignedComma(&s);
-ret->floatScore = sqlFloatComma(&s);
-ret->sourceCount = sqlUnsignedComma(&s);
-{
-int i;
-s = sqlEatChar(s, '{');
-AllocArray(ret->sourceIds, ret->sourceCount);
-for (i=0; i<ret->sourceCount; ++i)
-    {
-    ret->sourceIds[i] = sqlUnsignedComma(&s);
-    }
-s = sqlEatChar(s, '}');
-s = sqlEatChar(s, ',');
-}
-*pS = s;
-return ret;
-}
-
-void bed5SourcesFree(struct bed5Sources **pEl)
-/* Free a single dynamically allocated bed5Sources such as created
- * with bed5SourcesLoad(). */
-{
-struct bed5Sources *el;
-
-if ((el = *pEl) == NULL) return;
-freeMem(el->chrom);
-freeMem(el->name);
-freeMem(el->sourceIds);
-freez(pEl);
-}
-
-void bed5SourcesFreeList(struct bed5Sources **pList)
-/* Free a list of dynamically allocated bed5Sources's */
-{
-struct bed5Sources *el, *next;
-
-for (el = *pList; el != NULL; el = next)
-    {
-    next = el->next;
-    bed5SourcesFree(&el);
-    }
-*pList = NULL;
-}
-
-void bed5SourcesOutput(struct bed5Sources *el, FILE *f, char sep, char lastSep) 
-/* Print out bed5Sources.  Separate fields with sep. Follow last field with lastSep. */
-{
-fprintf(f, "%u", el->bin);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->chrom);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->chromStart);
-fputc(sep,f);
-fprintf(f, "%u", el->chromEnd);
-fputc(sep,f);
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->name);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->score);
-fputc(sep,f);
-fprintf(f, "%g", el->floatScore);
-fputc(sep,f);
-fprintf(f, "%u", el->sourceCount);
-fputc(sep,f);
-{
-int i;
-if (sep == ',') fputc('{',f);
-for (i=0; i<el->sourceCount; ++i)
-    {
-    fprintf(f, "%u", el->sourceIds[i]);
-    fputc(',', f);
-    }
-if (sep == ',') fputc('}',f);
-}
-fputc(lastSep,f);
-}
-
-/* -------------------------------- End autoSql Generated Code -------------------------------- */
-