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To receive announcements of new genome
assembly releases, new software features, updates and
training seminars by email, subscribe to the
genome-announce mailing list.
+ 27 May 2014 -
+ New Roadmap Epigenomics Integrative Analysis Hub now available
+
+
+
+
+ We are pleased to announce the addition of the
+ Roadmap Epigenomics Integrative Analysis Hub to our list of publicly available track hubs.
+ This new hub, produced by VizHub at Washington
+ University in St. Louis (WUSTL), contains hundreds of tracks that cover the wide range of epigenomic data
+ available from the Roadmap Epigenomics
+ Project. This hub contains data from over 40 different assays carried out on over 250 different
+ cell and sample types. These assays include RNA-seq, MeDIP-seq, MRE-seq, methylC-seq, DNase
+ hypersensitivity, chromHMM segmentation, ChIP-seq, and more than 30 histone modifications. The data
+ contained in this hub is complementary to the ENCODE data available at UCSC and in the ENCODE
+ Integrative Analysis public hub.
+
+
+
+ You can view more data produced by the Roadmap Epigenomics Project in their other publicly available
+ track hub, the Roadmap Epigenomics Data Complete Collection. You can use these two hubs together
+ to access all the available Roadmap Epigenomics Project data using the UCSC Genome Browser. To access
+ and view these hubs, navigate to the Track Hub gateway page
+ and select both the Roadmap Epigenomics Integrative Analysis Hub and Roadmap Epigenomics Data
+ Complete Collection Hub from the Public Hubs list.
+
+
+
+ Any queries about the data should be directed to
+ Ting Wang from VizHub.
+
+
+
+
+
15 May 2014 -
New UCSC Gene Track Released for GRCh38/hg38
We're happy to announce the release of a new UCSC Genes track for the
GRCh38/hg38 human Genome Browser.
The new release has 104,178 transcripts, compared with 82,960 in the previous
version on hg19. The total number of canonical genes has increased from
31,848 to 48,424. Comparing the new gene set with the previous version:
- 69,691 transcripts did not change between versions.
- 619 transcripts were not carried forward to the new version.
- 8,879 transcripts are "compatible" with those in the previous set,
@@ -118,87 +156,61 @@
bases.
Bulk downloads of the sequence and annotation data may be obtained from the Genome Browser
FTP server or the
Downloads page.
Please observe the conditions for use when
accessing and using these data sets. The annotation tracks for this browser were
generated by UCSC and collaborators woldwide. See the Credits page for a detailed list of the
organizations and individuals who contributed to this release.
-
- 08 May 2014 -
- New Elephant Shark (calMil1) Assembly Now Available in the Genome Browser
-
-
- A Genome Browser is now available for the elephant shark (Callorhinchus milii)
- assembly released December 2013 by the Singapore Institute of Molecular and Cell Biology
- (IMCB version Callorhinchus_milii-6.1.3, UCSC version calMil1). For more
- information and statistics about this assembly, see the NCBI assembly record
- for
- Callorhinchus_milii-6.1.3. There are 21,204 scaffolds with a total size of 974,498,586
- bases.
-
-
- Bulk downloads of the sequence and annotation data may be obtained from the Genome Browser
- FTP server or the
- Downloads page.
- Please observe the conditions for use when
- accessing and using these data sets. The annotation tracks for this browser were
- generated by UCSC and collaborators woldwide. See the Credits page for a detailed list of the
- organizations and individuals who contributed to this release.
-
-
-
+
+
+
08 May 2014 -
New Elephant Shark (calMil1) Assembly Now Available in the Genome
Browser:
A Genome Browser is now available for the elephant shark (Callorhinchus milii)
assembly released December 2013 by the Singapore Institute of Molecular
and Cell Biology.
Read more
- -->
-
+
-
- 05 May 2014 -
+
+ 06 May 2014 -
Introducing the new stacked overlay for multi-wiggle tracks:
We are excited to announce the release of the new "stacked"
overlay method for multi-wiggle tracks.
Read more
-
- 29 Apr 2014 -
- 100-species Conservation track re-release:
- We released the initial version of the 100-species Conservation track
- for the hg19 human assembly in November 2013. Over the past few months,
- we found a couple of inconsistencies and decided, for the integrity of
- the data, that we should rerun the computation pipeline and re-release
- the data. Read more
-
-
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