File Changes for hiram

v301_base to v302_preview (2014-06-09 to 2014-06-16) v302

• src/hg/inc/versionInfo.h
  • lines changed 2, context: html, text, full: html, text
    maintain the new copyright message in versionInfo.h refs #13415
• src/hg/makeDb/doc/hg38.txt
  • lines changed 17, context: html, text, full: html, text
    add scientific name phylo tree file for the 7-way refs #13300
  • lines changed 35, context: html, text, full: html, text
    reload cytoBand track with corrected data refs #13379
• src/hg/makeDb/doc/petMar2.txt
  • lines changed 13, context: html, text, full: html, text
    build procedure for Lamprey genes refs #13358
  • lines changed 45, context: html, text, full: html, text
    build procedure for Lamprey genes refs #13358
• src/hg/makeDb/doc/quickAssembly.txt
  • lines changed 5, context: html, text, full: html, text
    automatic download genbank refs #252
  • lines changed 36, context: html, text, full: html, text
    updating windowMasker sequence refs #252
• src/hg/makeDb/trackDb/grcIncidentDb.html
  • lines changed 1, context: html, text, full: html, text
    incidents now come from a different directory refs #12407
  • lines changed 1, context: html, text, full: html, text
    correct generic URL reference to the GRC directory refs #12407
• src/hg/makeDb/trackDb/human/grcIncidentDb.html
  • lines changed 25, context: html, text, full: html, text
    incidents now come from a different directory refs #12407
• src/hg/makeDb/trackDb/lamprey/petMar2/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    add search rule and vis pack for lampreyGenes refs #9153
  • lines changed 2, context: html, text, full: html, text
    fix search rule for lampreyGenes refs #9153
• src/hg/txGene/txGeneValidation/makefile
  • lines changed 2, context: html, text, full: html, text
    create scripts destination refs #13327
  • lines changed 3, context: html, text, full: html, text
    include DESTDIR on SCRIPTS destination refs #13327
• src/hg/utils/automation/grcUpdate.sh
  • lines changed 92, context: html, text, full: html, text
    new style of processing for GRC incident update track refs #12407
• src/hg/utils/phyloTrees/db.ncbiTaxId.tab
  • lines changed 131, context: html, text, full: html, text
    convenient to have db to taxId relation refs #10272
  • lines changed 221, context: html, text, full: html, text
    not sequence number on db name and with species name and download site refs #10272
• src/hg/utils/phyloTrees/dbCommonScientificCladeOrderkey.tab
  • lines changed 32, context: html, text, full: html, text
    adding 32 new assemblies now available refs #10272
• src/inc/common.mk
  • lines changed 5, context: html, text, full: html, text
    can find libpng.a in usr local lib on Mavericks with homebrew refs #13327
  • lines changed 10, context: html, text, full: html, text
    eliminate need for MACHTYPE setting and correct it when incorrect refs #12209
• src/makefile
  • lines changed 1, context: html, text, full: html, text
    eliminate need for MACHTYPE setting and correct it when incorrect refs #12209
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 2, context: html, text, full: html, text
    v302 preview1 refs #13448
• src/utils/qa/weeklybld/doHgTablesTestRobot.csh
  • lines changed 2, context: html, text, full: html, text
    removing pauline from emails and eliminate ann duplicate email refs #13189
• src/utils/qa/weeklybld/doNewBranch.csh
  • lines changed 2, context: html, text, full: html, text
    removing pauline from emails and eliminate ann duplicate email refs #13189
• src/utils/qa/weeklybld/doNewReview.csh
  • lines changed 1, context: html, text, full: html, text
    removing pauline from emails and eliminate ann duplicate email refs #13189
• src/utils/qa/weeklybld/doNewReview2.csh
  • lines changed 1, context: html, text, full: html, text
    removing pauline from emails and eliminate ann duplicate email refs #13189
• src/utils/qa/weeklybld/updateCgiVersion.csh
  • lines changed 5, context: html, text, full: html, text
    maintain the new copyright message in versionInfo.h refs #13415