File Changes for angie

v302_preview to v302_preview2 (2014-06-16 to 2014-06-23) v302

• src/hg/inc/hdb.h
  • lines changed 3, context: html, text, full: html, text
    hdb's hGetParent wasn't working because it used hMaybeTrackInfo whichlooks up only one track, not its parent or children. It was used in only
    one place in the code, so I replaced it with a call to tdbForTrack.
    fixes #13477 (Search results don't open super tracks)
    
• src/hg/lib/hdb.c
  • lines changed 22, context: html, text, full: html, text
    hdb's hGetParent wasn't working because it used hMaybeTrackInfo whichlooks up only one track, not its parent or children. It was used in only
    one place in the code, so I replaced it with a call to tdbForTrack.
    fixes #13477 (Search results don't open super tracks)
    
• src/hg/lib/hgFind.c
  • lines changed 17, context: html, text, full: html, text
    hdb's hGetParent wasn't working because it used hMaybeTrackInfo whichlooks up only one track, not its parent or children. It was used in only
    one place in the code, so I replaced it with a call to tdbForTrack.
    fixes #13477 (Search results don't open super tracks)
    
• src/hg/makeDb/trackDb/human/hg19/lincRNAs.ra
  • lines changed 6, context: html, text, full: html, text
    User suggestion - make lincRNAsTranscripts searchable.refs #13475
    
  • lines changed 2, context: html, text, full: html, text
    Tweak to lincRNAsTranscripts search: all but one name in this trackare TCONS_* accessions that should short-circuit. The one anomalous
    name is a gene name and should not short-circuit, so it will go on
    to get matches in gene and genbank tracks.
    
• src/hg/makeDb/trackDb/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    Removed semiShortCircuit behavior from stsMapAliasMrnaAcc becausesome aliases conflict with gene names, and if it triggers a short
    circuit then the user never sees the matches in gene & genbank tracks.
    
• src/lib/annoStreamVcf.c
  • lines changed 1, context: html, text, full: html, text
    In asvSetRegion, don't try to set tabix region if chrom is NULL (position is genome)because that call will fail and then we'd get the wrong idea and set self->eof, oops.