52b721ced395f7bcefb6e9ce4c1b8ac803f3c7a8 steve Tue Jul 15 08:58:05 2014 -0700 Modified static docs for ochPri3 and sorAra2 release (redmine #9347,9348) diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html index 9a972c2..42a15a6 100755 --- src/hg/htdocs/indexNews.html +++ src/hg/htdocs/indexNews.html @@ -1,129 +1,126 @@

News

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- 19 June 2014 - - Conservation Track Released for Rat - -

- We are pleased to announce the release of a new Conservation track based on the rat - (RGSC 5.0/rn5) assembly. This track shows multiple alignments of 13 vertebrate species and - measurements of evolutionary conservation using two methods (phastCons and phyloP) from the - PHAST package for all species. The multiple alignments were generated using multiz and other - tools in the UCSC/Penn State Bioinformatics comparative genomics alignment pipeline. - Conserved elements identified by phastCons are also displayed in this track. For more - details, visit the - track description page. + 15 July 2014 - + New Shrew (sorAra2) Assembly Now Available in the Genome Browser +

- With the release of this new conservation track, we have changed the default rat browser on - our website from rn4 to rn5. In general, the Genome Browser will continue to display - whichever rat assembly you have already been viewing, and will default to the rn5 assembly - only for those users who haven't recently viewed a rat assembly. However, there are - circumstances in which the browser may update the view to the newer version, for instance - if you reset your browser settings to the default values. If you find yourself - in a situation where some of your favorite browser tracks have "disappeared", - you may want to check that you're viewing the expected assembly. + We are pleased to announce the release of a Genome Browser for the August 2008 + assembly of shrew, Sorex araneus (Broad SorAra2.0, UCSC version + sorAra2). The whole genome shotgun assembly was provided by + The Broad Institute. + There are 12,845 scaffolds with a total size of 2,423,158,183 bases.

- We would like to thank Pauline Fujita, Matthew Speir, and Hiram Clawson for their efforts in - creating this track. + Bulk downloads of the sequence and annotation data are available via the Genome + Browser + FTP server + or the + Downloads + page. These data have + specific conditions for use. + The shrew (sorAra2) browser annotation tracks were generated by UCSC and + collaborators worldwide. See the + Credits page for a detailed + list of the organizations and individuals who contributed to this release.

- 30 May 2014 - - New Human Variation Track Now Available + 15 July 2014 - + New Pika (ochPri3) Assembly Now Available in the Genome Browser

- We would like to announce the release of the new Exome Variant Server (EVS) Variants track. - The - EVS, maintained by the - Nickerson lab at the University - of Washington, contains variant annotations for over 6,500 exomes that were sequenced as - part of the NHLBI GO Exome Sequencing Project - (ESP). This annotation includes information such as function, clinical association, dbSNP - rsID, - average sample read depth, and much more. You can find more information on how the data for - this track was generated on the - track description page. - + We are pleased to announce the release of a Genome Browser for the May 2012 + assembly of pika, Ochotona princeps (Broad OchPri3.0, UCSC version + ochPri3). The whole genome shotgun assembly was provided by + The Broad Institute. + There are 10,420 scaffolds with a total size of 2,229,835,716 bases. +

- We would like to acknowledge Tim Dreszer and Matthew Speir for their hard work in creating - this track. + Bulk downloads of the sequence and annotation data are available via the Genome + Browser + FTP server + or the + Downloads + page. These data have + specific conditions for use. + The pika (ochPri3) browser annotation tracks were generated by UCSC and + collaborators worldwide. See the + Credits page for a detailed + list of the organizations and individuals who contributed to this release.

- 22 May 2014 - - New Roadmap Epigenomics Integrative Analysis Hub now available: - We are pleased to announce the addition of the - Roadmap Epigenomics Integrative Analysis Hub - to our list of publicly available track hubs. - Read more. + 19 June 2014 - + Conservation Track Released for Rat (rn5): + We have released a new Conservation track based on the rat (rn5) assembly. + Read more.

- 15 May 2014 - - New UCSC Gene Track Released for GRCh38/hg38: - We're happy to announce the release of a new UCSC Genes track for the - GRCh38/hg38 human Genome Browser. - Read more. + 30 May 2014 - + New Human Variation Track Now Available: + We are pleased to announce the release of the new Exome Variant Server (EVS) Variants track. + Read more.