e5b618fdd979ed53b92e9cb0d44a8be433b92426 donnak Wed Jul 2 14:08:00 2014 -0700 Reworded a couple sentences in 6/19 news announcement. Fixed missing subject line in archived news item. Added a Read More link to one of the staged announcements. Fixed lines >100 chars (sorry -- should've been separate commit). diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html index 2030823..9a972c2 100755 --- src/hg/htdocs/indexNews.html +++ src/hg/htdocs/indexNews.html @@ -21,100 +21,109 @@ To receive announcements of new genome assembly releases, new software features, updates and training seminars by email, subscribe to the <A HREF="http://groups.google.com/a/soe.ucsc.edu/group/genome-announce?hl=en" TARGET=_blank>genome-announce</A> mailing list.</P> <!-- start news --> <hr> <p> <font face="courier" size="3"><b> 19 June 2014 - Conservation Track Released for Rat</b> </font> </p> <p> - We are pleased to announce the release of a new Conservation track based on the rat (RGSC 5.0/rn5) assembly. - This track shows multiple alignments of 13 vertebrate species and measurements of evolutionary - conservation using two methods (phastCons and phyloP) from the PHAST package for all species. The - multiple alignments were generated using multiz and other tools in the UCSC/Penn State Bioinformatics - comparative genomics alignment pipeline. Conserved elements identified by phastCons are also displayed - in this track. For more details, visit the <a href="../cgi-bin/hgTrackUi?db=rn5&g=cons13way"> - track description page</a>. + We are pleased to announce the release of a new Conservation track based on the rat + (RGSC 5.0/rn5) assembly. This track shows multiple alignments of 13 vertebrate species and + measurements of evolutionary conservation using two methods (phastCons and phyloP) from the + PHAST package for all species. The multiple alignments were generated using multiz and other + tools in the UCSC/Penn State Bioinformatics comparative genomics alignment pipeline. + Conserved elements identified by phastCons are also displayed in this track. For more + details, visit the + <a href="../cgi-bin/hgTrackUi?db=rn5&g=cons13way">track description page</a>. </p> <p> - With the release of this new conservation track for the rat (RGSC 5.0/rn5) assembly, we have changed the - default rat browser on our website from rn4 to rn5. In general, the Genome Browser will continue to display - whichever rat assembly you are already viewing, however, by default it will go to the rn5 assembly for users - that haven't recently viewed a rat assembly. However, there are circumstances in which the assembly may - switch to the newer version (for instance, if you reset your browser to the defaults). If you find yourself - in a situation where some of your favorite browser tracks have "disappeared", you may want to check that - you're viewing the right assembly. + With the release of this new conservation track, we have changed the default rat browser on + our website from rn4 to rn5. In general, the Genome Browser will continue to display + whichever rat assembly you have already been viewing, and will default to the rn5 assembly + only for those users who haven't recently viewed a rat assembly. However, there are + circumstances in which the browser may update the view to the newer version, for instance + if you reset your browser settings to the default values. If you find yourself + in a situation where some of your favorite browser tracks have "disappeared", + you may want to check that you're viewing the expected assembly. </p> <p> - We would like to thank Pauline Fujita, Matthew Speir, and Hiram Clawson for their efforts in creating this track. + We would like to thank Pauline Fujita, Matthew Speir, and Hiram Clawson for their efforts in + creating this track. </p> <hr> <p> <font face="courier" size="3"><b> 30 May 2014 - New Human Variation Track Now Available</b> </font> </p> <p> - We are pleased to announce the release of the new Exome Variant Server (EVS) Variants track. The + We would like to announce the release of the new Exome Variant Server (EVS) Variants track. + The <a href="http://evs.gs.washington.edu/EVS/" target="_blank">EVS</a>, maintained by the - <a href="http://chum.gs.washington.edu/" target="_blank">Nickerson lab</a> at the University of - Washington, contains variant annotations for over 6,500 exomes that were sequenced as part of the - <a href="https://esp.gs.washington.edu/drupal/" target="_blank">NHLBI GO Exome Sequencing Project</a> - (ESP). This annotation includes information such as function, clinical association, dbSNP rsID, - average sample read depth, and much more. You can find more information on how the data for this - track was generated on the <a href="../cgi-bin/hgTrackUi?db=hg19&g=evsEsp6500" - >track description page</a>. + <a href="http://chum.gs.washington.edu/" target="_blank">Nickerson lab</a> at the University + of Washington, contains variant annotations for over 6,500 exomes that were sequenced as + part of the <a href="https://esp.gs.washington.edu/drupal/" + target="_blank">NHLBI GO Exome Sequencing Project</a> + (ESP). This annotation includes information such as function, clinical association, dbSNP + rsID, + average sample read depth, and much more. You can find more information on how the data for + this track was generated on the + <a href="../cgi-bin/hgTrackUi?db=hg19&g=evsEsp6500">track description page</a>. <p> - We would like to acknowledge Tim Dreszer and Matthew Speir for their hard work in creating this track. + We would like to acknowledge Tim Dreszer and Matthew Speir for their hard work in creating + this track. </p> <hr> <!-- staged for archive use. NOTE: condense header line from .... </b></font><p> to </b>: </font> <p> <font face="courier" size="3"><b> 19 June 2014 - Conservation Track Released for Rat (rn5)</b>: </font> - We are pleased to announce the release of a new Conservation track based on the rat (rn5) assembly. + We have released a new Conservation track based on the rat (rn5) assembly. + <a href="goldenPath/newsarch.html#061914">Read more</a>. </p> <p> <font face="courier" size="3"><b> 30 May 2014 - New Human Variation Track Now Available</b>: </font> We are pleased to announce the release of the new Exome Variant Server (EVS) Variants track. - <a href="goldenPath/newsarch.html#053014">Read more</a> + <a href="goldenPath/newsarch.html#053014">Read more</a>. </p> --> <!-- start archives --> <p> <font face="courier" size="3"><b> 22 May 2014 - New Roadmap Epigenomics Integrative Analysis Hub now available</b>: </font> We are pleased to announce the addition of the - <a href="../cgi-bin/hgTracks?db=hg19&hubUrl=http://vizhub.wustl.edu/VizHub/RoadmapIntegrative.txt" - >Roadmap Epigenomics Integrative Analysis Hub</a> to our list of publicly available track hubs. - <a href="goldenPath/newsarch.html#052714">Read more</a> + <a href="../cgi-bin/hgTracks?db=hg19&hubUrl=http://vizhub.wustl.edu/VizHub/RoadmapIntegrative.txt">Roadmap Epigenomics Integrative Analysis Hub</a> + to our list of publicly available track hubs. + <a href="goldenPath/newsarch.html#052714">Read more</a>. </p> <p> <font face="courier" size="3"><b> 15 May 2014 - + New UCSC Gene Track Released for GRCh38/hg38</b>: </font> We're happy to announce the release of a new UCSC Genes track for the - GRCh38/hg38 human Genome Browser.</b></font> - <a href="goldenPath/newsarch.html#051514">Read more</a> + GRCh38/hg38 human Genome Browser. + <a href="goldenPath/newsarch.html#051514">Read more</a>. </p> </TD><TD WIDTH=15> </TD></TR></TABLE> <BR></TD></TR></TABLE> </TD></TR></TABLE>