7e2f310031f198d5bacfed5f3b8706b5e78feebc galt Mon Aug 4 23:19:34 2014 -0700 fixing typo in help message. diff --git src/hg/genePredToGtf/genePredToGtf.c src/hg/genePredToGtf/genePredToGtf.c index 3ac77ec..51fd547 100644 --- src/hg/genePredToGtf/genePredToGtf.c +++ src/hg/genePredToGtf/genePredToGtf.c @@ -13,31 +13,31 @@ static void usage() /* Explain usage and exit. */ { errAbort( "genePredToGtf - Convert genePred table or file to gtf.\n" "usage:\n" " genePredToGtf database genePredTable output.gtf\n" "If database is 'file' then track is interpreted as a file\n" "rather than a table in database.\n" "options:\n" " -utr - Add 5UTR and 3UTR features\n" " -honorCdsStat - use cdsStartStat/cdsEndStat when defining start/end\n" " codon records\n" - " -source=src set source name to uses\n" + " -source=src set source name to use\n" " -addComments - Add comments before each set of transcript records.\n" " allows for easier visual inspection\n" "Note: use a refFlat table or extended genePred table or file to include\n" "the gene_name attribute in the output. This will not work with a refFlat\n" "table dump file. If you are using a genePred file that starts with a numeric\n" "bin column, drop it using the UNIX cut command:\n" " cut -f 2- in.gp | genePredToGtf file stdin out.gp\n" ); } /* FIXME: * - right now, if not using -honorCdsStat and the CDS is not a multiple of * three, a start_codon is written but not a stop_codon. This is * deceptive. Should really not output either, maybe add a comment. */