7fdfab0ba90789194773f2bbd31bcc6ab161631a
galt
  Tue Aug 5 10:57:28 2014 -0700
Fixes #12559. GenomeSpace support added to hgTables.
diff --git src/hg/hgTables/mainPage.c src/hg/hgTables/mainPage.c
index cd7e9d8..2441874 100644
--- src/hg/hgTables/mainPage.c
+++ src/hg/hgTables/mainPage.c
@@ -459,37 +459,44 @@
     hPrintf(" <OPTION VALUE=%s", ot->name);
     if (sameString(ot->name, outputType))
 	hPrintf(" SELECTED");
     if (sameString(ot->name, outBed) || sameString(ot->name, outWigBed))
         hPrintf(" id=\"outBed\"");
     hPrintf(">%s\n", ot->label);
     }
 hPrintf("</SELECT>\n");
 hPrintf(" ");
 
 if (!cfgOptionBooleanDefault("hgta.disableSendOutput", FALSE))
     {
     hPrintf(" Send output to ");
     cgiMakeCheckBoxIdAndJS("sendToGalaxy", doGalaxy(),
         "checkboxGalaxy",
-        "onclick=\"document.getElementById('checkboxGreat').checked=false; return true;\"");
+	"onclick=\"document.getElementById('checkboxGreat').checked=false;"
+	      	  "document.getElementById('checkboxGenomeSpace').checked=false; return true;\"");
     hPrintf("<A HREF=\""GALAXY_URL_BASE"\" target=_BLANK>Galaxy</A>\n");
     nbSpaces(2);
     cgiMakeCheckBoxIdAndJS("sendToGreat", doGreat(),
         "checkboxGreat",
         "onclick=\"return onSelectGreat();\"");
     hPrintf(" <A HREF=\"http://great.stanford.edu\" target=_BLANK>GREAT</A>");
+    nbSpaces(2);
+    cgiMakeCheckBoxIdAndJS("sendToGenomeSpace", doGenomeSpace(),
+	"checkboxGenomeSpace",
+    	"onclick=\"document.getElementById('checkboxGreat').checked=false;"
+		  "document.getElementById('checkboxGalaxy').checked=false; return true;\"");
+    hPrintf(" <A HREF=\"http://www.genomespace.org\" target=_BLANK>GenomeSpace</A>");
     }
 
 hPrintf("</TD></TR>\n");
 }
 
 struct outputType otAllFields = { NULL,	outPrimaryTable,"all fields from selected table", };
 struct outputType otSelected =  { NULL, outSelectedFields,
                                   "selected fields from primary and related tables",  };
 struct outputType otSequence =  { NULL, outSequence,    "sequence", };
 struct outputType otPal =       { NULL, outPalOptions,
                                   "CDS FASTA alignment from multiple alignment", };
 struct outputType otGff =         { NULL, outGff,         "GTF - gene transfer format", };
 struct outputType otBed =         { NULL, outBed,         "BED - browser extensible data", };
 struct outputType otCustomTrack = { NULL, outCustomTrack, "custom track", };
 struct outputType otHyperlinks =  { NULL, outHyperlinks,  "hyperlinks to Genome Browser", };
@@ -949,41 +956,45 @@
   "format, to calculate intersections between tracks, and to retrieve "
   "DNA sequence covered by a track. For help in using this application "
   "see <A HREF=\"#Help\">Using the Table Browser</A> for a description "
   "of the controls in this form, the "
   "<A HREF=\"../goldenPath/help/hgTablesHelp.html\">User's Guide</A> for "
   "general information and sample queries, and the OpenHelix Table Browser "
   "<A HREF=\"http://www.openhelix.com/cgi/tutorialInfo.cgi?id=28\" "
   "TARGET=_blank>tutorial</A> for a narrated presentation of the software "
   "features and usage. "
   "For more complex queries, you may want to use "
   "<A HREF=\""GALAXY_URL_BASE"\" target=_BLANK>Galaxy</A> or "
   "our <A HREF=\"../goldenPath/help/mysql.html\">public "
   "MySQL server</A>. "
   "To examine the biological function of your set through annotation "
   "enrichments, send the data to "
-  "<A HREF=\"http://great.stanford.edu\">GREAT</A>. Refer to the "
+  "<A HREF=\"http://great.stanford.edu\" target=_BLANK>GREAT</A>. "
+  "Send data to "
+  "<A HREF=\"http://www.genomespace.org\" target=_BLANK>GenomeSpace</A> for use with diverse computational tools. "
+  "Refer to the "
   "<A HREF=\"../goldenPath/credits.html\">Credits</A> page for the list of "
   "contributors and usage restrictions associated with these data. "
   "All tables can be downloaded in their entirety from the "
   "<A HREF=\"http://hgdownload.cse.ucsc.edu/downloads.html\""
   ">Sequence and Annotation Downloads</A> page."
    );
 
 hPrintf("<script type=\"text/javascript\">\n");
 hPrintf("function onSelectGreat() {\n");
 hPrintf("document.getElementById('checkboxGalaxy').checked=false;\n");
+hPrintf("document.getElementById('checkboxGenomeSpace').checked=false;\n");
 hPrintf("document.getElementById('outBed').selected=true;\n");
 hPrintf("return true;\n");
 hPrintf("}\n");
 hPrintf("</script>\n");
 
 
 /* Main form. */
 hPrintf("<FORM ACTION=\"%s\" NAME=\"mainForm\" METHOD=%s>\n",
 	getScriptName(), cartUsualString(cart, "formMethod", "POST"));
 cartSaveSession(cart);
 jsInit();
 showMainControlTable(conn);
 hPrintf("</FORM>\n");
 
 /* Hidden form - for benefit of javascript. */