7fdfab0ba90789194773f2bbd31bcc6ab161631a galt Tue Aug 5 10:57:28 2014 -0700 Fixes #12559. GenomeSpace support added to hgTables. diff --git src/hg/hgTables/makefile src/hg/hgTables/makefile index 5d59691..b16d3af 100644 --- src/hg/hgTables/makefile +++ src/hg/hgTables/makefile @@ -1,93 +1,93 @@ include ../../inc/common.mk L += ${HALLIBS} ${MYSQLLIBS} -lm MYLIBDIR = ../../lib/${MACHTYPE} MYLIBS = ${MYLIBDIR}/jkhgap.a ${MYLIBDIR}/jkweb.a A = hgTables T = tstbug.o O = $A.o asFilter.o bam.o bedList.o bigBed.o bigWig.o \ chromGraph.o compositeTrack.o custom.o filterFields.o \ gffOut.o hal.o identifiers.o intersect.o correlate.o correlatePlot.o \ joining.o maf.o mainPage.o microarrayTables.o rangeHistogram.o schema.o pal.o \ - seqOut.o sumStats.o usage.o vcf.o wiggle.o wikiTrack.o galaxy.o great.o userRegions.o + seqOut.o sumStats.o usage.o vcf.o wiggle.o wikiTrack.o galaxy.o great.o genomeSpace.o userRegions.o include ../../inc/cgi_build_rules.mk rsyncDataOpts = --times --recursive --omit-dir-times --cvs-exclude --delete my:: rm -f ${CGI_BIN}-${USER}/all.joiner cp ../makeDb/schema/all.joiner ${CGI_BIN}-${USER} rm -rf ${CGI_BIN}-${USER}/greatData rsync ${rsyncDataOpts} greatData ${CGI_BIN}-${USER}/ chmod -R a+rX ${CGI_BIN}-${USER}/greatData chmod a+r ${CGI_BIN}-${USER}/all.joiner chmod g+w ${CGI_BIN}-${USER}/all.joiner alpha:: rm -f ${CGI_BIN}/all.joiner cp ../makeDb/schema/all.joiner ${CGI_BIN} rm -rf ${CGI_BIN}/greatData rsync ${rsyncDataOpts} greatData ${CGI_BIN}/ chmod -R a+rX ${CGI_BIN}/greatData chmod a+r ${CGI_BIN}/all.joiner chmod g+w ${CGI_BIN}/all.joiner beta:: rm -f ${CGI_BIN}-beta/all.joiner cp ../makeDb/schema/all.joiner ${CGI_BIN}-beta rm -rf ${CGI_BIN}-beta/greatData rsync ${rsyncDataOpts} greatData ${CGI_BIN}-beta/ chmod -R a+rX ${CGI_BIN}-beta/greatData chmod a+r ${CGI_BIN}-beta/all.joiner chmod g+w ${CGI_BIN}-beta/all.joiner install:: rm -f ${DESTDIR}${CGI_BIN}/all.joiner cp ../makeDb/schema/all.joiner ${DESTDIR}${CGI_BIN} rm -rf ${DESTDIR}${CGI_BIN}/greatData rsync ${rsyncDataOpts} greatData ${DESTDIR}${CGI_BIN}/ chmod -R a+rX ${DESTDIR}${CGI_BIN}/greatData chmod a+r ${DESTDIR}${CGI_BIN}/all.joiner chmod g+w ${DESTDIR}${CGI_BIN}/all.joiner compile: $O ${CC} -g $O ${MYLIBS} ${L} mv ${AOUT} $A${EXE} # all objects depend on hgTables.h asObj.o: hgTables.h bedList.o: hgTables.h correlate.h bigWig.o: hgTables.h custom.o: hgTables.h compositeTrack.o: hgTables.h filterFields.o: hgTables.h galaxy.o: hgTables.h gffOut.o: hgTables.h great.o: hgTables.h hgTables.o: hgTables.h identifiers.o: hgTables.h intersect.o: hgTables.h javascript.o: hgTables.h joining.o: hgTables.h maf.o: hgTables.h mainPage.o: hgTables.h rangeHistogram.o: hgTables.h schema.o: hgTables.h seqOut.o: hgTables.h sumStats.o: hgTables.h usage.o: hgTables.h wiggle.o: hgTables.h correlate.h correlate.o: hgTables.h correlate.h correlatePlot.o: hgTables.h correlate.h compiletest: $T ${CC} -Wall $T ${MYLIBS} ${L} compileLists: listFiles.o ${CC} -Wall listFiles.o ${MYLIBS} ${L}