a9a29995abe1e134d84bb80bdae1c0318060feff
kate
  Wed Aug 6 00:41:21 2014 -0700
Tool to load GTEx (NIH Common Fund Gene Tissue Expression).  Quite similar to microarray table organization.
diff --git src/hg/inc/gtexSample.h src/hg/inc/gtexSample.h
new file mode 100644
index 0000000..267facc
--- /dev/null
+++ src/hg/inc/gtexSample.h
@@ -0,0 +1,69 @@
+/* gtexSample.h was originally generated by the autoSql program, which also 
+ * generated gtexSample.c and gtexSample.sql.  This header links the database and
+ * the RAM representation of objects. */
+
+#ifndef GTEXSAMPLE_H
+#define GTEXSAMPLE_H
+
+#define GTEXSAMPLE_NUM_COLS 4
+
+extern char *gtexSampleCommaSepFieldNames;
+
+struct gtexSample
+/* GTEx sample description */
+    {
+    struct gtexSample *next;  /* Next in singly linked list. */
+    unsigned id;	/* internal id */
+    char *tissue;	/* GTEX tissue description */
+    char *donor;	/* GTEX donor name */
+    char *name;	/* GTEX sample name */
+    };
+
+void gtexSampleStaticLoad(char **row, struct gtexSample *ret);
+/* Load a row from gtexSample table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+
+struct gtexSample *gtexSampleLoad(char **row);
+/* Load a gtexSample from row fetched with select * from gtexSample
+ * from database.  Dispose of this with gtexSampleFree(). */
+
+struct gtexSample *gtexSampleLoadAll(char *fileName);
+/* Load all gtexSample from whitespace-separated file.
+ * Dispose of this with gtexSampleFreeList(). */
+
+struct gtexSample *gtexSampleLoadAllByChar(char *fileName, char chopper);
+/* Load all gtexSample from chopper separated file.
+ * Dispose of this with gtexSampleFreeList(). */
+
+#define gtexSampleLoadAllByTab(a) gtexSampleLoadAllByChar(a, '\t');
+/* Load all gtexSample from tab separated file.
+ * Dispose of this with gtexSampleFreeList(). */
+
+struct gtexSample *gtexSampleCommaIn(char **pS, struct gtexSample *ret);
+/* Create a gtexSample out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new gtexSample */
+
+void gtexSampleFree(struct gtexSample **pEl);
+/* Free a single dynamically allocated gtexSample such as created
+ * with gtexSampleLoad(). */
+
+void gtexSampleFreeList(struct gtexSample **pList);
+/* Free a list of dynamically allocated gtexSample's */
+
+void gtexSampleOutput(struct gtexSample *el, FILE *f, char sep, char lastSep);
+/* Print out gtexSample.  Separate fields with sep. Follow last field with lastSep. */
+
+#define gtexSampleTabOut(el,f) gtexSampleOutput(el,f,'\t','\n');
+/* Print out gtexSample as a line in a tab-separated file. */
+
+#define gtexSampleCommaOut(el,f) gtexSampleOutput(el,f,',',',');
+/* Print out gtexSample as a comma separated list including final comma. */
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+
+void gtexSampleCreateTable(struct sqlConnection *conn, char *table);
+/* Create expression record format table of given name. */
+
+#endif /* GTEXSAMPLE_H */
+