be940866cef3b0946adc4ce6091ff97a0a4a01f1
hiram
  Thu Jul 24 15:03:28 2014 -0700
display genoStart 1-relative for users refs #9741
diff --git src/hg/hgc/joinedRmskClick.c src/hg/hgc/joinedRmskClick.c
index 42a0d31..588ccab 100644
--- src/hg/hgc/joinedRmskClick.c
+++ src/hg/hgc/joinedRmskClick.c
@@ -300,31 +300,31 @@
 	printf ("<table cellspacing=\"0\">\n");
 	while ((row = sqlNextRow (sr2)) != NULL)
 	    {
 	    ro = rmskOut2Load (row + hasBin);
 	    if (!isFirst++)
 	    printOutTableHeader (ro->strand[0]);
 	    printf ("  <tr>\n");
 	    printf ("    <td %s>%d</td>\n", data_style, ro->swScore);
 	    printf ("    <td %s>%3.1f</td>\n", data_style,
 		    (double) ro->milliDiv * (double) 0.01);
 	    printf ("    <td %s>%3.1f</td>\n", data_style,
 		    (double) ro->milliDel * (double) 0.01);
 	    printf ("    <td %s>%3.1f</td>\n", data_style,
 		    (double) ro->milliIns * (double) 0.01);
 	    printf ("    <td %s>%s</td>\n", data_style, ro->genoName);
-	    printf ("    <td %s>%d</td>\n", data_style, ro->genoStart);
+	    printf ("    <td %s>%d</td>\n", data_style, ro->genoStart + 1);
 	    printf ("    <td %s>%d</td>\n", data_style, ro->genoEnd);
 	    printf ("    </A>");
 	    printf ("    <td %s>(%d)</td>\n", data_style, ro->genoLeft);
 	    printf ("    <td %s>%s</td>\n", data_style, ro->strand);
 	    printf ("    <td %s>%s</td>\n", data_style, ro->repName);
 	    printf ("    <td %s>%s/%s</td>\n", data_style, ro->repClass,
 		    ro->repFamily);
 	    printf ("    <td %s>%d</td>\n", data_style, ro->repStart);
 	    printf ("    <td %s>%d</td>\n", data_style, ro->repEnd);
 	    printf ("    <td %s>(%d)</td>\n", data_style, ro->repLeft);
 	    printf ("    <td %s>%d</td>\n", data_style, ro->id);
 	    printf ("  <td>\n");
 	    printf ("<A HREF=\"%s&db=%s&position=%s%%3A%d-%d\">Browser</A>",
 		    hgTracksPathAndSettings (), database, seqName,
 		    ro->genoStart + 1, ro->genoEnd);
@@ -366,31 +366,31 @@
 	     "aligned sequence names and consensus positions may differ "
 	     "from the final annotation.<p>\n");
 	printf ("<table>\n");
 	while ((row = sqlNextRow (sr2)) != NULL)
 	    {
 	    ro = rmskAlignLoad (row + hasBin);
 	    printf ("  <tr>\n");
 	    printf ("    <td>%d</td>\n", ro->swScore);
 	    printf ("    <td>%3.2f</td>\n",
 		    (double) ro->milliDiv * (double) 0.01);
 	    printf ("    <td>%3.2f</td>\n",
 		    (double) ro->milliDel * (double) 0.01);
 	    printf ("    <td>%3.2f</td>\n",
 		    (double) ro->milliIns * (double) 0.01);
 	    printf ("    <td>%s</td>\n", ro->genoName);
-	    printf ("    <td>%d</td>\n", ro->genoStart);
+	    printf ("    <td>%d</td>\n", ro->genoStart + 1);
 	    printf ("    <td>%d</td>\n", ro->genoEnd);
 	    printf ("    <td>(%d)</td>\n", ro->genoLeft);
 	    printf ("    <td>%s</td>\n", ro->strand);
 	    printf ("    <td>%s</td>\n", ro->repName);
 	    printf ("    <td>%s/%s</td>\n", ro->repClass, ro->repFamily);
 	    if (ro->strand[0] == '-')
 		{
 		printf ("    <td>(%d)</td>\n", ro->repLeft);
 		printf ("    <td>%d</td>\n", ro->repEnd);
 		printf ("    <td>%d</td>\n", ro->repStart);
 		}
 	    else
 		{
 		printf ("    <td>%d</td>\n", ro->repStart);
 		printf ("    <td>%d</td>\n", ro->repEnd);