bc3a7df713801c868fdfc457f1ccee3645d9ed27
hiram
  Mon Jul 21 12:00:48 2014 -0700
temporary avoid description field refs #9741
diff --git src/hg/lib/rmskJoined.c src/hg/lib/rmskJoined.c
index d29d64e..998a4d9 100644
--- src/hg/lib/rmskJoined.c
+++ src/hg/lib/rmskJoined.c
@@ -1,221 +1,220 @@
 /* rmskJoined.c was originally generated by the autoSql program, which also 
  * generated rmskJoined.h and rmskJoined.sql.  This module links the database and
  * the RAM representation of objects. */
 
 /* Copyright (C) 2014 The Regents of the University of California 
  * See README in this or parent directory for licensing information. */
 
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "rmskJoined.h"
 
 
 struct rmskJoined *rmskJoinedLoad(char **row)
 /* Load a rmskJoined from row fetched with select * from rmskJoined
  * from database.  Dispose of this with rmskJoinedFree(). */
 {
 struct rmskJoined *ret;
 
 AllocVar(ret);
 ret->blockCount = sqlSigned(row[9]);
 ret->chrom = cloneString(row[0]);
 ret->chromStart = sqlUnsigned(row[1]);
 ret->chromEnd = sqlUnsigned(row[2]);
 ret->name = cloneString(row[3]);
 ret->score = sqlUnsigned(row[4]);
 safecpy(ret->strand, sizeof(ret->strand), row[5]);
 ret->alignStart = sqlUnsigned(row[6]);
 ret->alignEnd = sqlUnsigned(row[7]);
 ret->reserved = sqlUnsigned(row[8]);
 {
 int sizeOne;
 sqlSignedDynamicArray(row[10], &ret->blockSizes, &sizeOne);
 assert(sizeOne == ret->blockCount);
 }
 {
 int sizeOne;
 sqlSignedDynamicArray(row[11], &ret->blockRelStarts, &sizeOne);
 assert(sizeOne == ret->blockCount);
 }
 ret->id = cloneString(row[12]);
-ret->description = cloneString(row[13]);
+// ret->description = cloneString(row[13]);
 return ret;
 }
 
 struct rmskJoined *rmskJoinedLoadAll(char *fileName) 
 /* Load all rmskJoined from a whitespace-separated file.
  * Dispose of this with rmskJoinedFreeList(). */
 {
 struct rmskJoined *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[14];
 
 while (lineFileRow(lf, row))
     {
     el = rmskJoinedLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct rmskJoined *rmskJoinedLoadAllByChar(char *fileName, char chopper) 
 /* Load all rmskJoined from a chopper separated file.
  * Dispose of this with rmskJoinedFreeList(). */
 {
 struct rmskJoined *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[14];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = rmskJoinedLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct rmskJoined *rmskJoinedCommaIn(char **pS, struct rmskJoined *ret)
 /* Create a rmskJoined out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new rmskJoined */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->chrom = sqlStringComma(&s);
 ret->chromStart = sqlUnsignedComma(&s);
 ret->chromEnd = sqlUnsignedComma(&s);
 ret->name = sqlStringComma(&s);
 ret->score = sqlUnsignedComma(&s);
 sqlFixedStringComma(&s, ret->strand, sizeof(ret->strand));
 ret->alignStart = sqlUnsignedComma(&s);
 ret->alignEnd = sqlUnsignedComma(&s);
 ret->reserved = sqlUnsignedComma(&s);
 ret->blockCount = sqlSignedComma(&s);
 {
 int i;
 s = sqlEatChar(s, '{');
 AllocArray(ret->blockSizes, ret->blockCount);
 for (i=0; i<ret->blockCount; ++i)
     {
     ret->blockSizes[i] = sqlSignedComma(&s);
     }
 s = sqlEatChar(s, '}');
 s = sqlEatChar(s, ',');
 }
 {
 int i;
 s = sqlEatChar(s, '{');
 AllocArray(ret->blockRelStarts, ret->blockCount);
 for (i=0; i<ret->blockCount; ++i)
     {
     ret->blockRelStarts[i] = sqlSignedComma(&s);
     }
 s = sqlEatChar(s, '}');
 s = sqlEatChar(s, ',');
 }
 ret->id = sqlStringComma(&s);
 ret->description = sqlStringComma(&s);
 *pS = s;
 return ret;
 }
 
 void rmskJoinedFree(struct rmskJoined **pEl)
 /* Free a single dynamically allocated rmskJoined such as created
  * with rmskJoinedLoad(). */
 {
 struct rmskJoined *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->chrom);
 freeMem(el->name);
 freeMem(el->blockSizes);
 freeMem(el->blockRelStarts);
 freeMem(el->id);
 freeMem(el->description);
 freez(pEl);
 }
 
 void rmskJoinedFreeList(struct rmskJoined **pList)
 /* Free a list of dynamically allocated rmskJoined's */
 {
 struct rmskJoined *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     rmskJoinedFree(&el);
     }
 *pList = NULL;
 }
 
 void rmskJoinedOutput(struct rmskJoined *el, FILE *f, char sep, char lastSep) 
 /* Print out rmskJoined.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->chrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->chromStart);
 fputc(sep,f);
 fprintf(f, "%u", el->chromEnd);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->name);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->score);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->strand);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->alignStart);
 fputc(sep,f);
 fprintf(f, "%u", el->alignEnd);
 fputc(sep,f);
 fprintf(f, "%u", el->reserved);
 fputc(sep,f);
 fprintf(f, "%d", el->blockCount);
 fputc(sep,f);
 {
 int i;
 if (sep == ',') fputc('{',f);
 for (i=0; i<el->blockCount; ++i)
     {
     fprintf(f, "%d", el->blockSizes[i]);
     fputc(',', f);
     }
 if (sep == ',') fputc('}',f);
 }
 fputc(sep,f);
 {
 int i;
 if (sep == ',') fputc('{',f);
 for (i=0; i<el->blockCount; ++i)
     {
     fprintf(f, "%d", el->blockRelStarts[i]);
     fputc(',', f);
     }
 if (sep == ',') fputc('}',f);
 }
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->id);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->description);
 if (sep == ',') fputc('"',f);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
-