facc0ec35e6e1243cf6519987d9684bf28f73669 mspeir Thu Jul 31 15:15:24 2014 -0700 Updating docs for rn6 release, refs #13578 diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html index 42a15a6..e24a565 100755 --- src/hg/htdocs/indexNews.html +++ src/hg/htdocs/indexNews.html @@ -14,113 +14,115 @@ </TD></TR></TABLE> </TD></TR></TABLE> <TABLE BGCOLOR="#fffee8" WIDTH="100%" CELLPADDING=0> <TR><TH HEIGHT=3></TH></TR> <TR><TD WIDTH=10></TD> <TD> <P> To receive announcements of new genome assembly releases, new software features, updates and training seminars by email, subscribe to the <A HREF="http://groups.google.com/a/soe.ucsc.edu/group/genome-announce?hl=en" TARGET=_blank>genome-announce</A> mailing list.</P> <!-- start news --> <hr> - - <p> - <font face="courier" size="3"><b> 15 July 2014 - - New Shrew (sorAra2) Assembly Now Available in the Genome Browser</b> + <font face="courier" size="3"><b>30 July 2014 - + New Rat (rn6) Assembly Now Available in the Genome Browser</b> </font> </p> <p> - We are pleased to announce the release of a Genome Browser for the August 2008 - assembly of shrew, <em>Sorex araneus</em> (Broad SorAra2.0, UCSC version - sorAra2). The whole genome shotgun assembly was provided by - <a href="http://www.broadinstitute.org/" - target="_blank">The Broad Institute</a>. - There are 12,845 scaffolds with a total size of 2,423,158,183 bases. + We are excited to announce the release of a Genome Browser for the July 2014 assembly + of rat, <em>Rattus norvegicus</em> (RGSC Rnor_6.0, UCSC version rn6)! This + assembly is provided by the Rat Genome Sequencing Consortium, which is comprised of + eight research organizations across the United States and Canada and led by the + <a href="https://www.hgsc.bcm.edu/" target="_blank">Baylor College of Medicine</a>. + The new RGSC Rnor_6.0 assembly contains a new, partially assembled Y chromosome + as well as improvements to other regions of the genome. You can find more information + on the RGSC's efforts to sequence rat genome on the Baylor College of Medicine's + <a href="https://www.hgsc.bcm.edu/other-mammals/rat-genome-project" + target="_blank">project page</a>. </p> <p> Bulk downloads of the sequence and annotation data are available via the Genome Browser - <a href="ftp://hgdownload.cse.ucsc.edu/goldenPath/sorAra2/">FTP server</a> + <a href="ftp://hgdownload.cse.ucsc.edu/goldenPath/rn6/">FTP server</a> or the - <a href="http://hgdownload.cse.ucsc.edu/downloads.html#shrew">Downloads</a> + <a href="http://hgdownload.cse.ucsc.edu/downloads.html#rat">Downloads</a> page. These data have - <a href="/goldenPath/credits.html#shrew_credits">specific conditions for use</a>. - The shrew (sorAra2) browser annotation tracks were generated by UCSC and + <a href="../goldenPath/credits.html#rat_use">specific conditions for use</a>. + The rat (rn6) browser annotation tracks were generated by UCSC and collaborators worldwide. See the - <a href="/goldenPath/credits.html#shrew_credits">Credits</a> page for a detailed + <a href="../goldenPath/credits.html#rat_credits">Credits</a> page for a detailed list of the organizations and individuals who contributed to this release. </p> <hr> - <p> <font face="courier" size="3"><b> 15 July 2014 - - New Pika (ochPri3) Assembly Now Available in the Genome Browser</b> + New Shrew (sorAra2) Assembly Now Available in the Genome Browser</b> </font> </p> <p> - We are pleased to announce the release of a Genome Browser for the May 2012 - assembly of pika, <em>Ochotona princeps</em> (Broad OchPri3.0, UCSC version - ochPri3). The whole genome shotgun assembly was provided by + We are pleased to announce the release of a Genome Browser for the August 2008 + assembly of shrew, <em>Sorex araneus</em> (Broad SorAra2.0, UCSC version + sorAra2). The whole genome shotgun assembly was provided by <a href="http://www.broadinstitute.org/" target="_blank">The Broad Institute</a>. - There are 10,420 scaffolds with a total size of 2,229,835,716 bases. + There are 12,845 scaffolds with a total size of 2,423,158,183 bases. </p> <p> Bulk downloads of the sequence and annotation data are available via the Genome Browser - <a href="ftp://hgdownload.cse.ucsc.edu/goldenPath/ochPri3/">FTP server</a> + <a href="ftp://hgdownload.cse.ucsc.edu/goldenPath/sorAra2/">FTP server</a> or the - <a href="http://hgdownload.cse.ucsc.edu/downloads.html#pika">Downloads</a> + <a href="http://hgdownload.cse.ucsc.edu/downloads.html#shrew">Downloads</a> page. These data have - <a href="/goldenPath/credits.html#pika_credits">specific conditions for use</a>. - The pika (ochPri3) browser annotation tracks were generated by UCSC and + <a href="/goldenPath/credits.html#shrew_credits">specific conditions for use</a>. + The shrew (sorAra2) browser annotation tracks were generated by UCSC and collaborators worldwide. See the - <a href="/goldenPath/credits.html#pika_credits">Credits</a> page for a detailed + <a href="/goldenPath/credits.html#shrew_credits">Credits</a> page for a detailed list of the organizations and individuals who contributed to this release. </p> <hr> <!-- staged for archive use. NOTE: condense header line from .... </b></font><p> to </b>: </font> <p> + <font face="courier" size="3"><b>30 July 2014 - + New Rat (rn6) Assembly Now Available in the Genome Browser</b>:</font> + We are excited to announce the release of a Genome Browser for the July 2014 assembly + of rat, <em>Rattus norvegicus</em> (RGSC Rnor_6.0, UCSC version rn6)! + </p> + + <p> <font face="courier" size="3"><b> 15 July 2014 - New Shrew (sorAra2) Assembly Now Available in the Genome Browser</b>: </font> We are pleased to announce the release of a Genome Browser for the August 2008 assembly of shrew, <em>Sorex araneus</em> (Broad SorAra2.0, UCSC version sorAra2). <a href="goldenPath/newsarch.html#071514">Read more</a>. </p> + --> + + <!-- start archives --> <p> <font face="courier" size="3"><b> 15 July 2014 - New Pika (ochPri3) Assembly Now Available in the Genome Browser</b>: </font> We are pleased to announce the release of a Genome Browser for the May 2012 assembly of pika, <em>Ochotona princeps</em> (Broad OchPri3.0, UCSC version ochPri3). <a href="goldenPath/newsarch.html#071514">Read more</a>. </p> - --> - <!-- start archives --> <p> <font face="courier" size="3"><b> 19 June 2014 - Conservation Track Released for Rat (rn5)</b>: </font> We have released a new Conservation track based on the rat (rn5) assembly. <a href="goldenPath/newsarch.html#061914">Read more</a>. </p> - <p> - <font face="courier" size="3"><b> 30 May 2014 - - New Human Variation Track Now Available</b>: </font> - We are pleased to announce the release of the new Exome Variant Server (EVS) Variants track. - <a href="goldenPath/newsarch.html#053014">Read more</a>. - </p> - </TD><TD WIDTH=15> </TD></TR></TABLE> <BR></TD></TR></TABLE> </TD></TR></TABLE>