Commits for steve

v304_preview to v304_preview2 (2014-07-28 to 2014-08-04) v304

• Fixed ordering of mm9 default gene tracks; fixed organization in mm10 file (redmine #7343)
  • src/hg/makeDb/trackDb/mouse/mm10/defaultPriority.ra - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/defaultPriority.ra - lines changed 28, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/trackDb.ra - lines changed 2, context: html, text, full: html, text
• Made some additional mm9 ordering changes (redmine #7343)
  • src/hg/makeDb/trackDb/mouse/mm9/defaultPriority.ra - lines changed 6, context: html, text, full: html, text
• Updated usage link per code review (redmine #13645)
  • src/hg/makeDb/trackDb/pika/ochPri3/description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/shrew/sorAra2/description.html - lines changed 1, context: html, text, full: html, text
• Made changes to fix track ordering in human assemblies; tracks visible by default should appear first and in alphabetic order (except for UCSC Genes which should appear first); all other tracks appear second and in alphabetic order (redmine #7343)
  • src/hg/makeDb/trackDb/human/hg16/defaultPriority.ra - lines changed 53, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg16/trackDb.encode.ra - lines changed 30, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg16/trackDb.ra - lines changed 14, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/defaultPriority.ra - lines changed 35, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/trackDb.encode.ra - lines changed 48, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/trackDb.instinct.ra - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg17/trackDb.ra - lines changed 23, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/defaultPriority.ra - lines changed 23, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/trackDb.encodeCompAndVar.ra - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/trackDb.encodeGenes.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/trackDb.encodeTxLevels.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/trackDb.ra - lines changed 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/defaultPriority.ra - lines changed 46, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/defaultPriority.ra - lines changed 38, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.7way.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.encode.ra - lines changed 27, context: html, text, full: html, text
• Made changes to fix track ordering in mouse assemblies; tracks visible by default should appear first and in alphabetic order (except for UCSC Genes which appears first); all other tracks appear second and in alphabetic order (redmine #7343)
  • src/hg/makeDb/trackDb/mouse/mm10/defaultPriority.ra - lines changed 23, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm7/defaultPriority.ra - lines changed 41, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm7/trackDb.ra - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm8/defaultPriority.ra - lines changed 47, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm8/trackDb.ra - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/defaultPriority.ra - lines changed 18, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/trackDb.ra - lines changed 21, context: html, text, full: html, text
• Made changes to fix track ordering in primate assemblies; tracks visible by default should appear first and in alphabetic order; all other tracks should appear second and in alphabetic order (redmine #7343)
  • src/hg/makeDb/trackDb/baboon/papAnu2/defaultPriority.ra - lines changed 26, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/baboon/papAnu2/trackDb.ra - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/baboon/papHam1/defaultPriority.ra - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/baboon/papHam1/trackDb.ra - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/bushbaby/otoGar3/defaultPriority.ra - lines changed 20, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/bushbaby/otoGar3/trackDb.ra - lines changed 11, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chimp/panTro1/defaultPriority.ra - lines changed 31, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chimp/panTro1/trackDb.ra - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chimp/panTro2/defaultPriority.ra - lines changed 41, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chimp/panTro2/trackDb.ra - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chimp/panTro3/defaultPriority.ra - lines changed 33, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chimp/panTro3/trackDb.ra - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chimp/panTro4/defaultPriority.ra - lines changed 30, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chimp/panTro4/trackDb.ra - lines changed 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/gibbon/nomLeu1/defaultPriority.ra - lines changed 21, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/gibbon/nomLeu1/trackDb.ra - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/gibbon/nomLeu2/defaultPriority.ra - lines changed 24, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/gibbon/nomLeu2/trackDb.ra - lines changed 15, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/gibbon/nomLeu3/defaultPriority.ra - lines changed 24, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/gibbon/nomLeu3/trackDb.ra - lines changed 15, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/gorilla/gorGor3/defaultPriority.ra - lines changed 27, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/gorilla/gorGor3/trackDb.ra - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/marmoset/calJac1/defaultPriority.ra - lines changed 38, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/marmoset/calJac1/trackDb.ra - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/marmoset/calJac3/defaultPriority.ra - lines changed 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/marmoset/calJac3/trackDb.ra - lines changed 11, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouseLemur/micMur1/defaultPriority.ra - lines changed 15, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouseLemur/micMur1/trackDb.ra - lines changed 11, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/orangutan/ponAbe2/defaultPriority.ra - lines changed 32, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/orangutan/ponAbe2/trackDb.ra - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rhesus/rheMac2/defaultPriority.ra - lines changed 46, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rhesus/rheMac2/trackDb.ra - lines changed 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rhesus/rheMac3/defaultPriority.ra - lines changed 19, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rhesus/rheMac3/trackDb.ra - lines changed 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/saiBol/saiBol1/defaultPriority.ra - lines changed 24, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/saiBol/saiBol1/trackDb.ra - lines changed 15, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tarsier/tarSyr1/defaultPriority.ra - lines changed 24, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tarsier/tarSyr1/trackDb.ra - lines changed 14, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/treeShrew/tupBel1/defaultPriority.ra - lines changed 24, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/treeShrew/tupBel1/trackDb.ra - lines changed 14, context: html, text, full: html, text
• Made changes to fix track ordering in rat assemblies; tracks visible by default should appear first and in alphabetic order; all other tracks should appear second and in alphabetic order (redmine #7343)
  • src/hg/makeDb/trackDb/rat/rn3/defaultPriority.ra - lines changed 46, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn3/trackDb.ra - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn4/defaultPriority.ra - lines changed 59, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn4/trackDb.ra - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn5/cons13way.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn5/defaultPriority.ra - lines changed 38, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn5/trackDb.ra - lines changed 11, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn6/defaultPriority.ra - lines changed 26, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn6/trackDb.ra - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/trackDb.ra - lines changed 7, context: html, text, full: html, text