965d1048e8671fb3a5630fe75deb88f24df386d7
kate
  Wed Aug 13 15:01:59 2014 -0700
Expand schema for GTex.  Create tissue short names and use these in sample and data tables. refs #13504
diff --git src/hg/inc/gtexTissueData.h src/hg/inc/gtexTissueData.h
new file mode 100644
index 0000000..3178f35
--- /dev/null
+++ src/hg/inc/gtexTissueData.h
@@ -0,0 +1,64 @@
+/* gtexTissueData.h was originally generated by the autoSql program, which also 
+ * generated gtexTissueData.c and gtexTissueData.sql.  This header links the database and
+ * the RAM representation of objects. */
+
+#ifndef GTEXTISSUEDATA_H
+#define GTEXTISSUEDATA_H
+
+#define GTEXTISSUEDATA_NUM_COLS 3
+
+extern char *gtexTissueDataCommaSepFieldNames;
+
+struct gtexTissueData
+/* GTEX Expression median level by tissue (RPKM levels, unmapped) */
+    {
+    struct gtexTissueData *next;  /* Next in singly linked list. */
+    char *geneId;	/* Gene identifier (ensembl) */
+    unsigned tissueCount;	/* Number of tissues */
+    float *scores;	/* RPKM median expression levels */
+    };
+
+struct gtexTissueData *gtexTissueDataLoad(char **row);
+/* Load a gtexTissueData from row fetched with select * from gtexTissueData
+ * from database.  Dispose of this with gtexTissueDataFree(). */
+
+struct gtexTissueData *gtexTissueDataLoadAll(char *fileName);
+/* Load all gtexTissueData from whitespace-separated file.
+ * Dispose of this with gtexTissueDataFreeList(). */
+
+struct gtexTissueData *gtexTissueDataLoadAllByChar(char *fileName, char chopper);
+/* Load all gtexTissueData from chopper separated file.
+ * Dispose of this with gtexTissueDataFreeList(). */
+
+#define gtexTissueDataLoadAllByTab(a) gtexTissueDataLoadAllByChar(a, '\t');
+/* Load all gtexTissueData from tab separated file.
+ * Dispose of this with gtexTissueDataFreeList(). */
+
+struct gtexTissueData *gtexTissueDataCommaIn(char **pS, struct gtexTissueData *ret);
+/* Create a gtexTissueData out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new gtexTissueData */
+
+void gtexTissueDataFree(struct gtexTissueData **pEl);
+/* Free a single dynamically allocated gtexTissueData such as created
+ * with gtexTissueDataLoad(). */
+
+void gtexTissueDataFreeList(struct gtexTissueData **pList);
+/* Free a list of dynamically allocated gtexTissueData's */
+
+void gtexTissueDataOutput(struct gtexTissueData *el, FILE *f, char sep, char lastSep);
+/* Print out gtexTissueData.  Separate fields with sep. Follow last field with lastSep. */
+
+#define gtexTissueDataTabOut(el,f) gtexTissueDataOutput(el,f,'\t','\n');
+/* Print out gtexTissueData as a line in a tab-separated file. */
+
+#define gtexTissueDataCommaOut(el,f) gtexTissueDataOutput(el,f,',',',');
+/* Print out gtexTissueData as a comma separated list including final comma. */
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+
+void gtexTissueDataCreateTable(struct sqlConnection *conn, char *table);
+/* Create expression record format table of given name. */
+
+#endif /* GTEXTISSUEDATA_H */
+