965d1048e8671fb3a5630fe75deb88f24df386d7
kate
  Wed Aug 13 15:01:59 2014 -0700
Expand schema for GTex.  Create tissue short names and use these in sample and data tables. refs #13504
diff --git src/hg/inc/gtexTissue.h src/hg/inc/gtexTissue.h
new file mode 100644
index 0000000..2b7c759
--- /dev/null
+++ src/hg/inc/gtexTissue.h
@@ -0,0 +1,69 @@
+/* gtexTissue.h was originally generated by the autoSql program, which also 
+ * generated gtexTissue.c and gtexTissue.sql.  This header links the database and
+ * the RAM representation of objects. */
+
+#ifndef GTEXTISSUE_H
+#define GTEXTISSUE_H
+
+#define GTEXTISSUE_NUM_COLS 4
+
+extern char *gtexTissueCommaSepFieldNames;
+
+struct gtexTissue
+/* GTEx tissue information */
+    {
+    struct gtexTissue *next;  /* Next in singly linked list. */
+    unsigned id;	/* internal id */
+    char *name;	/* short UCSC identifier */
+    char *description;	/* GTEX tissue type detail */
+    char *organ;	/* GTEX tissue collection area */
+    };
+
+void gtexTissueStaticLoad(char **row, struct gtexTissue *ret);
+/* Load a row from gtexTissue table into ret.  The contents of ret will
+ * be replaced at the next call to this function. */
+
+struct gtexTissue *gtexTissueLoad(char **row);
+/* Load a gtexTissue from row fetched with select * from gtexTissue
+ * from database.  Dispose of this with gtexTissueFree(). */
+
+struct gtexTissue *gtexTissueLoadAll(char *fileName);
+/* Load all gtexTissue from whitespace-separated file.
+ * Dispose of this with gtexTissueFreeList(). */
+
+struct gtexTissue *gtexTissueLoadAllByChar(char *fileName, char chopper);
+/* Load all gtexTissue from chopper separated file.
+ * Dispose of this with gtexTissueFreeList(). */
+
+#define gtexTissueLoadAllByTab(a) gtexTissueLoadAllByChar(a, '\t');
+/* Load all gtexTissue from tab separated file.
+ * Dispose of this with gtexTissueFreeList(). */
+
+struct gtexTissue *gtexTissueCommaIn(char **pS, struct gtexTissue *ret);
+/* Create a gtexTissue out of a comma separated string. 
+ * This will fill in ret if non-null, otherwise will
+ * return a new gtexTissue */
+
+void gtexTissueFree(struct gtexTissue **pEl);
+/* Free a single dynamically allocated gtexTissue such as created
+ * with gtexTissueLoad(). */
+
+void gtexTissueFreeList(struct gtexTissue **pList);
+/* Free a list of dynamically allocated gtexTissue's */
+
+void gtexTissueOutput(struct gtexTissue *el, FILE *f, char sep, char lastSep);
+/* Print out gtexTissue.  Separate fields with sep. Follow last field with lastSep. */
+
+#define gtexTissueTabOut(el,f) gtexTissueOutput(el,f,'\t','\n');
+/* Print out gtexTissue as a line in a tab-separated file. */
+
+#define gtexTissueCommaOut(el,f) gtexTissueOutput(el,f,',',',');
+/* Print out gtexTissue as a comma separated list including final comma. */
+
+/* -------------------------------- End autoSql Generated Code -------------------------------- */
+
+void gtexTissueCreateTable(struct sqlConnection *conn, char *table);
+/* Create expression record format table of given name. */
+
+#endif /* GTEXTISSUE_H */
+