f9de95b8b90a18c5a042d07b172dae60c2c94027
kate
  Thu Aug 14 11:09:41 2014 -0700
Cleanup
diff --git src/hg/lib/gtexData.c src/hg/lib/gtexData.c
deleted file mode 100644
index 16c5459..0000000
--- src/hg/lib/gtexData.c
+++ /dev/null
@@ -1,156 +0,0 @@
-/* gtexData.c was originally generated by the autoSql program, which also 
- * generated gtexData.h and gtexData.sql.  This module links the database and
- * the RAM representation of objects. */
-
-#include "common.h"
-#include "linefile.h"
-#include "dystring.h"
-#include "jksql.h"
-#include "gtexData.h"
-
-
-
-char *gtexDataCommaSepFieldNames = "geneId,sampleCount,sampleLevels";
-
-struct gtexData *gtexDataLoad(char **row)
-/* Load a gtexData from row fetched with select * from gtexData
- * from database.  Dispose of this with gtexDataFree(). */
-{
-struct gtexData *ret;
-
-AllocVar(ret);
-ret->sampleCount = sqlUnsigned(row[1]);
-ret->geneId = cloneString(row[0]);
-{
-int sizeOne;
-sqlFloatDynamicArray(row[2], &ret->sampleLevels, &sizeOne);
-assert(sizeOne == ret->sampleCount);
-}
-return ret;
-}
-
-struct gtexData *gtexDataLoadAll(char *fileName) 
-/* Load all gtexData from a whitespace-separated file.
- * Dispose of this with gtexDataFreeList(). */
-{
-struct gtexData *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[3];
-
-while (lineFileRow(lf, row))
-    {
-    el = gtexDataLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct gtexData *gtexDataLoadAllByChar(char *fileName, char chopper) 
-/* Load all gtexData from a chopper separated file.
- * Dispose of this with gtexDataFreeList(). */
-{
-struct gtexData *list = NULL, *el;
-struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[3];
-
-while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
-    {
-    el = gtexDataLoad(row);
-    slAddHead(&list, el);
-    }
-lineFileClose(&lf);
-slReverse(&list);
-return list;
-}
-
-struct gtexData *gtexDataCommaIn(char **pS, struct gtexData *ret)
-/* Create a gtexData out of a comma separated string. 
- * This will fill in ret if non-null, otherwise will
- * return a new gtexData */
-{
-char *s = *pS;
-
-if (ret == NULL)
-    AllocVar(ret);
-ret->geneId = sqlStringComma(&s);
-ret->sampleCount = sqlUnsignedComma(&s);
-{
-int i;
-s = sqlEatChar(s, '{');
-AllocArray(ret->sampleLevels, ret->sampleCount);
-for (i=0; i<ret->sampleCount; ++i)
-    {
-    ret->sampleLevels[i] = sqlFloatComma(&s);
-    }
-s = sqlEatChar(s, '}');
-s = sqlEatChar(s, ',');
-}
-*pS = s;
-return ret;
-}
-
-void gtexDataFree(struct gtexData **pEl)
-/* Free a single dynamically allocated gtexData such as created
- * with gtexDataLoad(). */
-{
-struct gtexData *el;
-
-if ((el = *pEl) == NULL) return;
-freeMem(el->geneId);
-freeMem(el->sampleLevels);
-freez(pEl);
-}
-
-void gtexDataFreeList(struct gtexData **pList)
-/* Free a list of dynamically allocated gtexData's */
-{
-struct gtexData *el, *next;
-
-for (el = *pList; el != NULL; el = next)
-    {
-    next = el->next;
-    gtexDataFree(&el);
-    }
-*pList = NULL;
-}
-
-void gtexDataOutput(struct gtexData *el, FILE *f, char sep, char lastSep) 
-/* Print out gtexData.  Separate fields with sep. Follow last field with lastSep. */
-{
-if (sep == ',') fputc('"',f);
-fprintf(f, "%s", el->geneId);
-if (sep == ',') fputc('"',f);
-fputc(sep,f);
-fprintf(f, "%u", el->sampleCount);
-fputc(sep,f);
-{
-int i;
-if (sep == ',') fputc('{',f);
-for (i=0; i<el->sampleCount; ++i)
-    {
-    fprintf(f, "%g", el->sampleLevels[i]);
-    fputc(',', f);
-    }
-if (sep == ',') fputc('}',f);
-}
-fputc(lastSep,f);
-}
-
-/* -------------------------------- End autoSql Generated Code -------------------------------- */
-
-void gtexDataCreateTable(struct sqlConnection *conn, char *table)
-/* Create table with given name. */
-{
-char query[512];
-
-sqlSafef(query, sizeof(query),
-"CREATE TABLE %s (\n"
-"    geneId varchar(255) not null,\n"
-"    sampleCount int unsigned not null,\n"
-"    sampleLevels longblob not null,\n"
-"    INDEX(geneId(10))\n"
-")\n",   table);
-sqlRemakeTable(conn, table, query);
-}