965d1048e8671fb3a5630fe75deb88f24df386d7 kate Wed Aug 13 15:01:59 2014 -0700 Expand schema for GTex. Create tissue short names and use these in sample and data tables. refs #13504 diff --git src/hg/lib/gtexSampleData.sql src/hg/lib/gtexSampleData.sql new file mode 100644 index 0000000..1f8a0dd --- /dev/null +++ src/hg/lib/gtexSampleData.sql @@ -0,0 +1,14 @@ +# gtexSampleData.sql was originally generated by the autoSql program, which also +# generated gtexSampleData.c and gtexSampleData.h. This creates the database representation of +# an object which can be loaded and saved from RAM in a fairly +# automatic way. + +#GTEX Expression data (RPKM levels, unmapped) +CREATE TABLE gtexSampleData ( + geneId varchar(255) not null, # Gene identifier (ensembl) + sample varchar(255) not null, # GTEX sample identifier + tissue varchar(255) not null, # Tissue short name + score float not null, # Expression level (RPKM) + #Indices + PRIMARY KEY(geneId) +);