File Changes for braney

v306_preview2 to v306_base (2014-09-15 to 2014-09-22) v306

• src/hg/hgTracks/mafTrack.c
  • lines changed 3, context: html, text, full: html, text
    color mismatches as red ticks in mafs
  • lines changed 23, context: html, text, full: html, text
    show SNPs as red in maf and wigMaf tracks if "showSnp on" is set in the trackDb
• src/hg/hgTracks/mafTrack.h
  • lines changed 2, context: html, text, full: html, text
    show SNPs as red in maf and wigMaf tracks if "showSnp on" is set in the trackDb
• src/hg/hgTracks/wigMafTrack.c
  • lines changed 5, context: html, text, full: html, text
    show SNPs as red in maf and wigMaf tracks if "showSnp on" is set in the trackDb
• src/hg/makeDb/doc/eboVir2/pfam.txt
  • lines changed 20, context: html, text, full: html, text
    add doc for pfam track
• src/hg/makeDb/doc/eboVir3/ncbiGene.txt
  • lines changed 10, context: html, text, full: html, text
    NCBI Genes for eboVir3
• src/hg/makeDb/doc/eboVir3/pfam.txt
  • lines changed 20, context: html, text, full: html, text
    add pfam track to eboVir3
• src/hg/makeDb/trackDb/ebola/eboVir2/ncbiGenePfam.html
  • lines changed 44, context: html, text, full: html, text
    add description page for Pfam Domains in NCBI Genes on eboVir2
• src/hg/makeDb/trackDb/ebola/eboVir2/trackDb.102way.ra
  • lines changed 1, context: html, text, full: html, text
    add frames table for 102way
  • lines changed 1, context: html, text, full: html, text
    show SNPs as red if "showSnp on" is set in the trackDb (trackDb changes)
• src/hg/makeDb/trackDb/ebola/eboVir2/trackDb.49way.ra
  • lines changed 1, context: html, text, full: html, text
    show SNPs as red if "showSnp on" is set in the trackDb (trackDb changes)
• src/hg/makeDb/trackDb/ebola/eboVir2/trackDb.49wayStrainNames.ra
  • lines changed 1, context: html, text, full: html, text
    fix some 49way strain names in trackDb to correspond to what's in the maf
  • lines changed 1, context: html, text, full: html, text
    show SNPs as red if "showSnp on" is set in the trackDb (trackDb changes)
• src/hg/makeDb/trackDb/ebola/eboVir2/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    add pFam track to eboVir2
• src/hg/makeDb/trackDb/ebola/eboVir3/trackDb.160way.ra
  • lines changed 1, context: html, text, full: html, text
    NCBI Genes for eboVir3
  • lines changed 1, context: html, text, full: html, text
    show SNPs as red if "showSnp on" is set in the trackDb (trackDb changes)
• src/hg/makeDb/trackDb/ebola/eboVir3/trackDb.ra
  • lines changed 12, context: html, text, full: html, text
    NCBI Genes for eboVir3
  • lines changed 8, context: html, text, full: html, text
    add pfam track to eboVir3
• src/hg/makeDb/trackDb/ebola/eboVir3/trackDb.strainName160way.ra
  • lines changed 1, context: html, text, full: html, text
    show SNPs as red if "showSnp on" is set in the trackDb (trackDb changes)
• src/hg/makeDb/trackDb/tagTypes.tab
  • lines changed 1, context: html, text, full: html, text
    show SNPs as red if "showSnp on" is set in the trackDb (trackDb changes)
• src/inc/maf.h
  • lines changed 6, context: html, text, full: html, text
    show SNPs as red in maf and wigMaf tracks if "showSnp on" is set in the trackDb
• src/lib/mafScore.c
  • lines changed 6, context: html, text, full: html, text
    color mismatches as red ticks in mafs
  • lines changed 54, context: html, text, full: html, text
    show SNPs as red in maf and wigMaf tracks if "showSnp on" is set in the trackDb