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To receive announcements of new genome assembly releases, new software features, updates and training seminars by email, subscribe to the genome-announce mailing list. + 04 September 2014 - + New ENCODE portal launched at www.encodeproject.org + + + The website for up-to-date information about the ENCODE project is no + longer hosted at www.genome.ucsc.edu/ENCODE. + Those UCSC ENCODE pages now archive information and tools from the ENCODE + production and pilot phases (2003 to 2012) including live links to visualize and download data. + Please navigate to the new ENCODE portal for recent data releases. Along with the ability to use + faceted searching to explore all ENCODE data, the ENCODE portal provides visualization + in the UCSC Genome Browser via a "Visualize Data" link on assay pages when + processed data files are available. + + +03 September 2014 - Data from the FaceBase Consortium Now Available in the Genome Browser We are pleased to announce that much of the data from the FaceBase Consortium is now available in the UCSC Genome Browser as a public track hub. This track hub contains data from numerous experiments carried out by the Potter and Visel labs to study craniofacial development in mice and humans, with tracks for the mm9, mm10, hg18, and hg19 assemblies. You can check out the hub on the mm9 assembly here. In addition to this public track hub, we have a set of microarray expression data hosted as a native track for both the mm9 and mm10 assemblies. This expression data compares expression across the mouse genome for a number of embryonic days and craniofacial cell types. For more information on this track, please see the track description page. We would like to thank Robert Kuhn, Pauline Fujita, and Matthew Speir from UCSC and Thomas Maher from the FaceBase Consortium for their efforts in bringing these resources to the UCSC Genome Browser. - -- 30 July 2014 - - New Rat (rn6) Assembly Now Available in the Genome Browser - - - - We are excited to announce the release of a Genome Browser for the July 2014 assembly - of rat, Rattus norvegicus (RGSC Rnor_6.0, UCSC version rn6)! This - assembly is provided by the Rat Genome Sequencing Consortium, which is comprised of - eight research organizations across the United States and Canada and led by the - Baylor College of Medicine. - The new RGSC Rnor_6.0 assembly contains a new, partially assembled Y chromosome - as well as improvements to other regions of the genome. You can find more information - on the RGSC's efforts to sequence rat genome on the Baylor College of Medicine's - project page. - -- Bulk downloads of the sequence and annotation data are available via the Genome - Browser - FTP server - or the - Downloads - page. These data have - specific conditions for use. - The rat (rn6) browser annotation tracks were generated by UCSC and - collaborators worldwide. See the - Credits page for a detailed - list of the organizations and individuals who contributed to this release. - -30 July 2014 - New Rat (rn6) Assembly Now Available in the Genome Browser: We are excited to announce the release of a Genome Browser for the July 2014 assembly - of rat, Rattus norvegicus (RGSC Rnor_6.0, UCSC version rn6)! + of rat, Rattus norvegicus (RGSC Rnor_6.0, UCSC version rn6). + Read more. - --> -15 July 2014 - New Shrew (sorAra2) Assembly Now Available in the Genome Browser: We are pleased to announce the release of a Genome Browser for the August 2008 assembly of shrew, Sorex araneus (Broad SorAra2.0, UCSC version sorAra2). Read more. -- 15 July 2014 - - New Pika (ochPri3) Assembly Now Available in the Genome Browser: - We are pleased to announce the release of a Genome Browser for the May 2012 - assembly of pika, Ochotona princeps (Broad OchPri3.0, UCSC version - ochPri3). Read more. - - |