Commits for hiram

v305_base to v306_preview (2014-09-02 to 2014-09-08) v306

• do not want to fail on remaking md5sum.txt if the query is the only entry in that file to begin with refs #13300
  • src/hg/utils/automation/doBlastzChainNet.pl - lines changed 1, context: html, text, full: html, text
• lastz runs completed refs #4049
  • src/hg/makeDb/doc/dm6.txt - lines changed 160, context: html, text, full: html, text
• running up ponAbe2 for snp141 build refs #13309
  • src/hg/makeDb/doc/hg38.txt - lines changed 76, context: html, text, full: html, text
• first pass at 27-way tree refs #4049
  • src/hg/utils/phyloTrees/dm6.27way.nh - lines changed 27, context: html, text, full: html, text
  • src/hg/utils/phyloTrees/dm6.27way.scientificNames.nh - lines changed 27, context: html, text, full: html, text
• finished lastz ponAbe2 for snp141 build refs #13309
  • src/hg/makeDb/doc/hg38.txt - lines changed 6, context: html, text, full: html, text
• 27-way phylo tree for dm6 refs #4049
  • src/hg/htdocs/images/phylo/dm6_27way.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
• 27-way phylo tree added refs #4096
  • src/hg/makeDb/trackDb/drosophila/dm6/trackDb.27way.ra - lines changed 106, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/drosophila/dm6/trackDb.ra - lines changed 9, context: html, text, full: html, text
• sGroups for dm6 27-way refs #4049
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 2, context: html, text, full: html, text
• now displaying cactus 100-way alignment refs #11636
  • src/hg/makeDb/trackDb/human/hg19/trackDb.cacTest100way.ra - lines changed 243, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 1, context: html, text, full: html, text
• v306 preview1 refs #13954
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text