Commits for kent

v305_base to v306_preview (2014-09-02 to 2014-09-08) v306

• Removing code that has been moved out of one shot and into production
  • src/oneShot/bigWigCluster/bigWigCluster.c - lines changed 399, context: html, text, full: html, text
  • src/oneShot/bigWigCluster/makefile - lines changed 3, context: html, text, full: html, text
• Updating tests
  • src/oneShot/hacTreeTest/hacTreeTest.c - lines changed 5, context: html, text, full: html, text
  • src/oneShot/hacTreeTest/testIt - lines changed 2, context: html, text, full: html, text
• Fixed typo in comment.
  • src/lib/hacTree.c - lines changed 1, context: html, text, full: html, text
• Making tmp dir a command line option. Adding id to merged wigs, which will keep temp files from clashing better (oops).
  • src/utils/bigWigCluster/bigWigCluster.c - lines changed 9, context: html, text, full: html, text
• Program to make a track hub out of UW DNAse I data seems to work.
  • src/hg/makeDb/outside/uwDnaseTrackHub/makefile - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/outside/uwDnaseTrackHub/uwDnaseTrackHub.c - lines changed 378, context: html, text, full: html, text
• Adding info on dnaseI build for hg38
  • src/hg/makeDb/doc/encode3/hg38_encode2_dnase1.txt - lines changed 166, context: html, text, full: html, text
• Adding build reference to DNAse build instructions to main hg38 doc.
  • src/hg/makeDb/doc/hg38.txt - lines changed 4, context: html, text, full: html, text