782605ac82e443df10b1e67dad8a66b050c9f50c
mspeir
  Wed Sep 3 16:06:53 2014 -0700
Adding announcements for FaceBase hub and track, refs #12607
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                  <font size="4"><a name="TOC"></a><b>&nbsp; News</b></font><a href="http://www.twitter.com/GenomeBrowser" target="_blank"><img src="http://twitter-badges.s3.amazonaws.com/t_small-a.png" title="Follow &#64;GenomeBrowser on Twitter" alt="Follow &#64;GenomeBrowser on Twitter" style="vertical-align:text-bottom; margin-left: 15px;"></a>
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           <P>
           To receive announcements of new genome 
           assembly releases, new software features, updates and 
           training seminars by email, subscribe to the
           <A HREF="http://groups.google.com/a/soe.ucsc.edu/group/genome-announce?hl=en"
           TARGET=_blank>genome-announce</A> mailing list.</P>
 
     <!-- start news -->
 	<hr>
+	<font face="courier" size="3"><b>03 September 2014 -
+	Data from the FaceBase Consortium Now Available in the Genome Browser</b>
+	</font>
+	</p>
+	<p>
+	We are pleased to announce that much of the data from the <a href="https://www.facebase.org/"
+	target"_blank">FaceBase Consortium</a> is now available in the UCSC Genome Browser as a
+	public track hub. This track hub contains data from numerous experiments carried out by
+	the Potter and Visel labs to study craniofacial development in mice and humans, with
+	tracks for the mm9, mm10, hg18, and hg19 assemblies. You can check out the hub on the
+	mm9 assembly
+	<a href="/cgi-bin/hgTracks?db=mm9&position=chr12%3A57795963-57815592&hubUrl=http://trackhub.facebase.org/hub.txt"
+	target="_blank">here</a>. In addition to this public track hub, we have a set of
+	microarray expression data hosted as a native track for both the mm9 and mm10 assemblies.
+	This expression data compares expression across the mouse genome for a number of embryonic
+	days and craniofacial cell types. For more information on this track, please see the track
+	<a href="/cgi-bin/hgTrackUi?org=mouse&db=mm9&g=FaceBase24SampleTypesAvg"
+	target="_blank">description page</a>.
+	</p>
+	<p>
+	We would like to thank Robert Kuhn, Pauline Fujita, and Matthew Speir from UCSC and Thomas
+	Maher from the FaceBase Consortium for their efforts in bringing these resources to the
+	UCSC Genome Browser.
+	</p>
+
+        <hr>
 	<font face="courier" size="3"><b>30 July 2014 -
 	New Rat (rn6) Assembly Now Available in the Genome Browser</b>
         </font>
         </p>
         <p>
 	We are excited to announce the release of a Genome Browser for the July 2014 assembly
 	of rat, <em>Rattus norvegicus</em> (RGSC Rnor_6.0, UCSC version rn6)! This
 	assembly is provided by the Rat Genome Sequencing Consortium, which is comprised of
 	eight research organizations across the United States and Canada and led by the
 	<a href="https://www.hgsc.bcm.edu/" target="_blank">Baylor College of Medicine</a>.
 	The new RGSC Rnor_6.0 assembly contains a new, partially assembled Y chromosome
 	as well as improvements to other regions of the genome. You can find more information
 	on the RGSC's efforts to sequence rat genome on the Baylor College of Medicine's
 	<a href="https://www.hgsc.bcm.edu/other-mammals/rat-genome-project"
 	target="_blank">project page</a>.
 	</p>
 	<p>
         Bulk downloads of the sequence and annotation data are available via the Genome
         Browser
         <a href="ftp://hgdownload.cse.ucsc.edu/goldenPath/rn6/">FTP server</a>
         or the
         <a href="http://hgdownload.cse.ucsc.edu/downloads.html#rat">Downloads</a>
         page. These data have
         <a href="../goldenPath/credits.html#rat_use">specific conditions for use</a>.
         The rat (rn6) browser annotation tracks were generated by UCSC and
         collaborators worldwide. See the
         <a href="../goldenPath/credits.html#rat_credits">Credits</a> page for a detailed
         list of the organizations and individuals who contributed to this release.
         </p>
 
         <hr>
-        <p>
-        <font face="courier" size="3"><b> 15 July 2014 -
-        New Shrew (sorAra2) Assembly Now Available in the Genome Browser</b>
-        </font>
-        </p>
-        <p>
-        We are pleased to announce the release of a Genome Browser for the August 2008
-        assembly of shrew, <em>Sorex araneus</em> (Broad SorAra2.0, UCSC version
-        sorAra2). The whole genome shotgun assembly was provided by
-        <a href="http://www.broadinstitute.org/"
-        target="_blank">The Broad Institute</a>.
-        There are 12,845 scaffolds with a total size of 2,423,158,183 bases.
-        </p>
-        <p>
-        Bulk downloads of the sequence and annotation data are available via the Genome
-        Browser
-        <a href="ftp://hgdownload.cse.ucsc.edu/goldenPath/sorAra2/">FTP server</a>
-        or the
-        <a href="http://hgdownload.cse.ucsc.edu/downloads.html#shrew">Downloads</a>
-        page. These data have
-        <a href="/goldenPath/credits.html#shrew_credits">specific conditions for use</a>.
-        The shrew (sorAra2) browser annotation tracks were generated by UCSC and
-        collaborators worldwide. See the
-        <a href="/goldenPath/credits.html#shrew_credits">Credits</a> page for a detailed
-        list of the organizations and individuals who contributed to this release.
-        </p>
-
-        <hr>
 
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 	<p>
+	<font face="courier" size="3"><b>01 September 2014 -
+	Data from the FaceBase Consortium Now Available in the Genome Browser</b>: </font>
+	We are pleased to announce that much of the data from the <a href="https://www.facebase.org/"
+	target"_blank">FaceBase Consortium</a> is now available in the UCSC Genome Browser as a public track hub.
+	</p>
+
+	<p>
 	<font face="courier" size="3"><b>30 July 2014 -
         New Rat (rn6) Assembly Now Available in the Genome Browser</b>:</font>
         We are excited to announce the release of a Genome Browser for the July 2014 assembly
         of rat, <em>Rattus norvegicus</em> (RGSC Rnor_6.0, UCSC version rn6)!
 	</p>
+                -->
 
+        <!-- start archives -->
         <p>
         <font face="courier" size="3"><b> 15 July 2014 -
         New Shrew (sorAra2) Assembly Now Available in the Genome Browser</b>: </font>
         We are pleased to announce the release of a Genome Browser for the August 2008
         assembly of shrew, <em>Sorex araneus</em> (Broad SorAra2.0, UCSC version
         sorAra2). <a href="goldenPath/newsarch.html#071514">Read more</a>.
         </p>
-                -->
-
-        <!-- start archives -->
 
         <p>
         <font face="courier" size="3"><b> 15 July 2014 -
         New Pika (ochPri3) Assembly Now Available in the Genome Browser</b>: </font>
         We are pleased to announce the release of a Genome Browser for the May 2012
         assembly of pika, <em>Ochotona princeps</em> (Broad OchPri3.0, UCSC version
         ochPri3). <a href="goldenPath/newsarch.html#071514">Read more</a>.
         </p>
 
-
-	<p>
-        <font face="courier" size="3"><b> 19 June 2014 -
-        Conservation Track Released for Rat (rn5)</b>: </font>
-        We have released a new Conservation track based on the rat (rn5) assembly.
-        <a href="goldenPath/newsarch.html#061914">Read more</a>.
-	</p>
-
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