1b8720b2667ace1c431004c522f8677fac96e4fa hiram Mon Oct 6 11:55:36 2014 -0700 adding mafToSnpBed to the utils build refs #14079 diff --git src/userApps/fetchKentSource.sh src/userApps/fetchKentSource.sh index cf31584..b8d8c43 100755 --- src/userApps/fetchKentSource.sh +++ src/userApps/fetchKentSource.sh @@ -22,31 +22,31 @@ rm -fr samtabix echo "fetch samtabix" 1>&2 git clone http://genome-source.cse.ucsc.edu/samtabix.git samtabix \ > /dev/null 2>&1 # These selective git archive commands only work up to a certain size # of fetched source (number of arguments), hence the multiple set of # individual fetches to get all the parts rm -f part1Src.zip part2Src.zip part3Src.zip part4Src.zip part5Src.zip export partNumber=1 export ofN="of 5" # this util changed from being in a directory to being a script # the extract can't overwrite the directory with a file -rm -fr kent/src/uniprotLift +rm -fr kent/src/utils/uniprotLift echo "fetch kent source part ${partNumber} ${ofN}" 1>&2 git archive --format=zip -9 --remote=git://genome-source.cse.ucsc.edu/kent.git \ --prefix=kent/ ${branch} \ src/machTest.sh \ src/ameme \ src/aladdin \ src/blat \ src/dnaDust \ src/fuse \ src/gfClient \ src/gfServer \ src/index \ src/makefile \ src/meta \