Commits for angie

v306_base to v307_preview (2014-09-22 to 2014-09-29) v307

• Added include files gireMethods & gireReferences to all track gire*.html files.
  • src/hg/makeDb/trackDb/ebola/gire2014FixedMissense.html - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/gire2014KikwitMissense.html - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/gire2014MayingaMissense.html - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/gire2014PolymorphicMissense.html - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/gire2014SpecificSnps.html - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/gireReferences.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/makeDb/trackDb/ebola/gireZebov.html - lines changed 10, context: html, text, full: html, text
• Tidying up after my comrades so hg19 trackDb can be built again.
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 4, context: html, text, full: html, text
• HT Hiram for noticing chrom ideogram bug in Ebola -- the ideogram's left labelchanges depending on band name, and band names with different widths cause the
  label width to change, and that causes the coords of the image areas to change;
  but the javascript was neglecting to update the ideogram image map, thinking it
  would be the same for any view on the same chromosome. Now we always update it.
  Not terribly expensive to replace an image map with only chromosome band areas.
  
  • src/hg/js/hgTracks.js - lines changed 9, context: html, text, full: html, text
• Make sure to call hReplaceGbdb on the path given to annoAssemblyNew.refs #11957
  
  • src/hg/hgVai/libifyMe.c - lines changed 8, context: html, text, full: html, text
  • src/hg/hgVarAnnogrator/hgVarAnnogrator.c - lines changed 8, context: html, text, full: html, text
  • src/hg/lib/tests/annoGratorTester.c - lines changed 8, context: html, text, full: html, text
• Fixing broken hgVarAnnogrator make (not reachable by top-level make) -- textOut interface changed, and we weren't using it anyway.
  • src/hg/hgVarAnnogrator/hgVarAnnogrator.c - lines changed 2, context: html, text, full: html, text