c11c9ea824cec06a1ab0e78a1744d418358041df donnak Tue Sep 30 17:06:17 2014 -0700 Made a few edits. diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html index 69deccc..1b528ee 100755 --- src/hg/htdocs/indexNews.html +++ src/hg/htdocs/indexNews.html @@ -23,61 +23,62 @@ </TD></TR></TABLE> <TABLE BGCOLOR="#fffee8" WIDTH="100%" CELLPADDING=0> <TR><TH HEIGHT=3></TH></TR> <TR><TD WIDTH=10></TD> <TD> <P> To receive announcements of new genome assembly releases, new software features, updates and training seminars by email, subscribe to the <A HREF="http://groups.google.com/a/soe.ucsc.edu/group/genome-announce?hl=en" TARGET=_blank>genome-announce</A> mailing list.</P> <!-- start news --> <hr> <font face="courier" size="3"><b>30 September 2014 - - Genome Browser for the Ebola Virus Now Available</b> + Genome Browser and Portal Released for the Ebola Virus</b> </font> <p> - We are excited to announce the release of a Genome Browser for the June 2014 assembly - of Ebola Virus (Sierra Leone 2014 (G3683/KM034562.1), UCSC version eboVir3)! The sequence, - <a href="http://www.ncbi.nlm.nih.gov/nuccore/KM034561" target="_blank">KM034562</a> was - deposited into GenBank by the Pardis Sabeti lab at the Broad Intstitue. We have worked - closely with the Sabeti lab and other Ebola experts throughout the world to incorporate + We are excited to announce the release of a Genome Browser and information portal for the + Aug. 2014 assembly of the Ebola virus (UCSC version eboVir3, GenBank accession + <a href="http://www.ncbi.nlm.nih.gov/nuccore/KM034562" target="_blank">KM034562</a>) + submitted by the Broad Institute. We have worked closely with the Pardis Sabeti lab at + the Broad Institute and other Ebola experts throughout the world to incorporate annotations that will be useful to those studying Ebola. Annotation tracks included in this - intitial release include genes from <a href="http://www.ncbi.nlm.nih.gov/" + initial release include genes from <a href="http://www.ncbi.nlm.nih.gov/" target="_blank">NCBI</a>, B- and T-cell epitopes from the <a href="http://www.iedb.org/" - target="_blank">IEDB</a>, structural annotiation from <a href="http://www.uniprot.org/" + target="_blank">IEDB</a>, structural annotiations from <a href="http://www.uniprot.org/" target="_blank">UniProt</a> and a wealth of SNP data from the <a href="http://www.ncbi.nlm.nih.gov/pubmed/25214632" target="_blank">2014 publication</a> - from the Sabeti lab. This initial release also contains a 160-way alignment of - 158 Ebola virus sequences from various African outbreaks, and 2 Marburg virus sequences. + by the Sabeti lab. This initial release also contains a 160-way alignment + comprising 158 Ebola virus sequences from various African outbreaks and 2 Marburg virus + sequences. You can find links to the Ebola virus Genome Browser and more information on the Ebola virus - itself on our <a href="/ebolaPortal/">Ebola Portal</a>. + itself on our <a href="/ebolaPortal/">Ebola Portal</a> page. </p> <p> Bulk downloads of the sequence and annotation data are available via the Genome Browser <a href="ftp://hgdownload.cse.ucsc.edu/goldenPath/eboVir3/">FTP server</a> or the - <a href="http://hgdownload.cse.ucsc.edu/downloads.html#ebola">Downloads</a> - page. These data have - <a href="../goldenPath/credits.html#ebola_use">specific conditions for use</a>. + <a href="http://hgdownload.cse.ucsc.edu/downloads.html#ebola_virus">Downloads</a> + page. The Ebola virus (eboVir3) browser annotation tracks were generated by UCSC and collaborators worldwide. See the - <a href="../goldenPath/credits.html#ebola_credits">Credits</a> page for a detailed - list of the organizations and individuals who contributed to this release. + <a href="goldenPath/credits.html#ebola_credits">Credits</a> page for a detailed + list of the organizations and individuals who contributed to this release and + the conditions for use of these data. </p> <hr> <font face="courier" size="3"><b>23 September 2014 - Ensembl Regulatory Build Now Available in the Genome Browser</b> </font> <p> We are pleased to announce that data from the <a href="http://www.ensembl.org/info/genome/funcgen/regulatory_build.html" target="_blank">Ensembl Regulatory Build</a> is now available in the UCSC Genome Browser as a public track hub for both hg19 and hg38. This track hub contains promoters and their flanking regions, enhancers, and many other regulatory features predicted across a number of cell lines using annotated segmentation states. Click <a href="/cgi-bin/hgTracks?db=hg19&position=chr21%3A33031597-33041570&hubUrl=http://ngs.sanger.ac.uk/production/ensembl/regulation/hub.txt">here</a> to view this hub on the hg19 assembly, or click