c551260410980f8ab037a8cd7fcf9ee1467bc001 katrina Wed Oct 22 15:47:07 2014 -0700 fixing typo in dbSNP announcement: assembies to assemblies diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html index 255c2af..a5bd31b 100755 --- src/hg/htdocs/indexNews.html +++ src/hg/htdocs/indexNews.html @@ -1,147 +1,147 @@ <!-- News Section ============================================- --> <TABLE WIDTH="100%" BGCOLOR="#888888" BORDER="0" CELLSPACING="0" CELLPADDING="1"> <TR><TD> <TABLE BGCOLOR="#fffee8" WIDTH="100%" BORDER="0" CELLSPACING="0" CELLPADDING="0"> <TR><TD> <TABLE BGCOLOR="#D9E4F8" BACKGROUND="images/hr.gif" WIDTH="100%" BORDER=0> <TR><TD> <!--cheap trick to get background on row to be continuous--> <TABLE CELLPADDING=0 CELLSPACING=0 WIDTH="100%"> <TR><TD ALIGN="left"> <font size="4"><a name="TOC"></a><b> News</b></font><a href="http://www.twitter.com/GenomeBrowser" target="_blank"><img src="http://twitter-badges.s3.amazonaws.com/t_small-a.png" title="Follow @GenomeBrowser on Twitter" alt="Follow @GenomeBrowser on Twitter" style="vertical-align:text-bottom; margin-left: 15px;"></a> <a title="Genome Browser Facebook page" href="http://www.facebook.com/ucscGenomeBrowser" target="_blank"><img src="/images/FB-f-Logo__blue_22.jpg" style="vertical-align:text-bottom; margin-left: 15px;" alt="Genome Browser Facebook page"></a> <a href="https://plus.google.com/107643636314131661344" rel="publisher"></a> </TD> <TD ALIGN="right"><A HREF="goldenPath/newsarch.html"><IMG SRC="images/news.jpg" ALT="" ALIGN="right" BORDER=0></A> </TD></TR></TABLE> </TD></TR></TABLE> <TABLE BGCOLOR="#fffee8" WIDTH="100%" CELLPADDING=0> <TR><TH HEIGHT=3></TH></TR> <TR><TD WIDTH=10></TD> <TD> <P> To receive announcements of new genome assembly releases, new software features, updates and training seminars by email, subscribe to the <A HREF="http://groups.google.com/a/soe.ucsc.edu/group/genome-announce?hl=en" TARGET=_blank>genome-announce</A> mailing list. Please see our <a href="http://genome.ucsc.edu/blog" target=_blank>blog</a> for posts about Genome Browser tools, features, projects and more. </p> <!-- start news --> <hr> <p> <font face="courier" size="3"><b>20 October 2014 - dbSNP 141 Available for hg19 and hg38</b></font> <p> We are pleased to announce the release of four tracks derived from NCBI <a href="http://www.ncbi.nlm.nih.gov/SNP/" target="_blank">dbSNP</a> Build 141 - data, available on the two most recent human assembies GRCh37/hg19 and GRCh38/hg38. + data, available on the two most recent human assemblies GRCh37/hg19 and GRCh38/hg38. The new tracks contain additional annotation data not included in previous dbSNP tracks, with corresponding coloring and filtering options in the Genome Browser. </p> <p> There are three SNP tracks available for the GRCh37/hg19 assembly. One is a track containing all mappings of reference SNPs to the human assembly, labeled "All SNPs (141)". The other two tracks are subsets of this track and show interesting and easily defined subsets of dbSNP: </p> <ul> <li>Common SNPs (141): uniquely mapped variants that appear in at least 1% of the population or are 100% non-reference <li>Flagged SNPs (141): uniquely mapped variants, excluding Common SNPs, that have been flagged by dbSNP as "clinically associated" </ul> <p> Unlike previous dbSNP releases for GRCh37/hg19, Build 141 does not include mappings to alternate haplotype sequences. In addition, variants that map to multiple genomic locations (e.g. to different chromosomes, or more than one position on the same chromosome) have been removed. </p> <p> This release also marks the first set of dbSNP data available for the newest human assembly, GRCh38/hg38. In addition to the three tracks described for hg19, there is one additional track available for hg38: <ul> <li>Mult. SNPs (141): variants that have been mapped to more than one genomic location </ul> <p> By default, only the Common SNPs (141) are visible; other tracks must be made visible using the track controls. You will find the other SNPs (141) tracks on both of GRCh37/hg19 and GRCh38/hg38 browsers in the "Variation" group. </p> <p> The tracks were produced at UCSC by Angie Hinrichs and Matthew Speir. We'd like to thank the dbSNP group at NCBI for providing access to these data. </p> <hr> <font face="courier" size="3"><b>07 October 2014 - Introducing the UCSC Genome Browser Blog</b> </font> <p> We're excited to introduce a new <a href="http://genome.ucsc.edu/blog" target="_blank">blog</a> that will feature posts by Genome Browser staff and guests. On the blog we'll be publishing in-depth information about UCSC Genome Browser features, tools, projects and related topics that we hope people will find both useful and interesting. We just published our inaugural post written by Jim Kent, the UCSC Genome Browser Architect and PI, on the <a href="http://genome.ucsc.edu/blog/2014-ebola-epidemic/" target="_blank">2014 Ebola Epidemic</a>. </p> <p> If you have a suggestion for a blog post topic, please let us know via our <a href="/cgi-bin/hgUserSuggestion">suggestion box</a>. </p> <hr> <!-- staged for archive use. NOTE: condense header line from .... </b></font><p> to </b>: </font> <p> <font face="courier" size="3"><b>20 October 2014 - dbSNP 141 Available for hg19 and hg38</b>: </font> We are pleased to announce the release of four tracks derived from NCBI <a href="http://www.ncbi.nlm.nih.gov/SNP/" target="_blank">dbSNP</a> Build 141 - data, available on the two most recent human assembies GRCh37/hg19 and GRCh38/hg38. + data, available on the two most recent human assemblies GRCh37/hg19 and GRCh38/hg38. <a href="goldenPath/newsarch.html#102014">Read more</a>. </p> <p> <font face="courier" size="3"><b>07 October 2014 - Introducing the UCSC Genome Browser Blog</b>: </font> We're excited to introduce a new <a href="http://genome.ucsc.edu/blog" target="_blank">blog</a> that will feature posts by Genome Browser staff and guests. <a href="goldenPath/newsarch.html#100714">Read more</a>. </p> --> <!-- start archives --> <p> <font face="courier" size="3"><b>30 September 2014 - Genome Browser for the Ebola Virus Now Available</b>: </font> We are excited to announce the release of a Genome Browser for the June 2014 assembly of Ebola Virus (Sierra Leone 2014 (G3683/KM034562.1), UCSC version eboVir3). <a href="goldenPath/newsarch.html#093014">Read more</a>. </p> <p> <font face="courier" size="3"><b>23 September 2014 - Ensembl Regulatory Build Now Available in the Genome Browser</b>: </font> We are pleased to announce that data from the <a href="http://www.ensembl.org/info/genome/funcgen/regulatory_build.html" target="_blank">Ensembl Regulatory Build</a> is now available in the UCSC Genome Browser as a public track hub for both hg19 and hg38. <a href="goldenPath/newsarch.html#092314">Read more</a>. </p> </TD><TD WIDTH=15> </TD></TR></TABLE> <BR></TD></TR></TABLE> </TD></TR></TABLE>