Commits for angie

v309_preview2 to v309_base (2014-11-17 to 2014-11-24) v309

• Case-sensitive comparison of strings with differing case was causing us to drop many dbNSFP annotations, ouch.refs #14360, #14367
  
  • src/hg/lib/annoFormatVep.c - lines changed 1, context: html, text, full: html, text
• Oof, expected output glossed over some missing info. :(
  • src/hg/lib/tests/expected/annoGrator/gpFx.txt - lines changed 6, context: html, text, full: html, text
• snp142: rebuilt tables that use dbSNP's Allele dump file because itwas incomplete when downloaded, then updated a couple weeks after the
  release.
  refs #14189
  
  • src/hg/makeDb/doc/hg19.txt - lines changed 29, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg38/variation.txt - lines changed 29, context: html, text, full: html, text