Commits for max

v309_preview2 to v309_base (2014-11-17 to 2014-11-24) v309

• adding apacheLogParse to git, better than having only a single copy in/cluster/bin/scripts.
  
  • src/utils/apacheLogParse - lines changed 903, context: html, text, full: html, text
  • src/utils/makefile - lines changed 2, context: html, text, full: html, text
• the UCSC GA4GH beacon, refs #14393
  • src/beacon/makefile - lines changed 36, context: html, text, full: html, text
  • src/beacon/query - lines changed 149, context: html, text, full: html, text
• making the beacon help message a little bit better, refs #14393
  • src/beacon/query - lines changed 7, context: html, text, full: html, text
• small makedoc change for hgmd update
  • src/hg/makeDb/doc/hg19.txt - lines changed 6, context: html, text, full: html, text
• more beacon bugfixes, refs #14393
  • src/beacon/query - lines changed 4, context: html, text, full: html, text
• adding port 80 to gbib firewall list
  • src/hg/htdocs/goldenPath/help/gbib.html - lines changed 3, context: html, text, full: html, text