eb0792f210e45a57cfa19b14d148cf48293de665
steve
  Mon Nov 17 10:11:34 2014 -0800
Created new autoSql definition for updated COSMIC track format
diff --git src/hg/lib/cosmicNew.as src/hg/lib/cosmicNew.as
new file mode 100644
index 0000000..83be3c0
--- /dev/null
+++ src/hg/lib/cosmicNew.as
@@ -0,0 +1,18 @@
+table cosmicNew
+"Catalog of Somatic Mutations in Cancer (COSMIC)"
+    (
+    string chrom;          "Reference sequence chromosome or scaffold"
+    uint   chromStart;     "Start position in chromosome"
+    uint   chromEnd;       "End position in chromosome"
+    string name;           "COSMIC mutation ID"
+    string geneName;       "Gene: HUGO symbol, mir-* ID, etc"
+    string transcriptAcc;  "ENST, NM_, XM_ or other transcript accession"
+    string mutDescription; "description of effect of variant on gene"
+    string hgvsCds;        "HGVS variant nomenclature representation of mutation in CDS"
+    string hgvsProt;       "HGVS variant nomenclature representation of mutation in protein"
+    lstring ntChange;      "nucleotide sequence change"
+    lstring aaChange;      "amino acid sequence change"
+    string tumorSite;      "organ or tissue from which tumor sample was taken"
+    int mutatedSamples;    "number of samples with the mutation"
+    int examinedSamples;   "number of samples examined"
+    )