d0d1c93e05c6d5b272ba2da9f57f08e49d513281 max Thu Nov 6 01:22:37 2014 -0800 removed duplicated line in last gbib commit (e30e926564), refs #14176 diff --git src/hg/hgLiftOver/hgLiftOver.c src/hg/hgLiftOver/hgLiftOver.c index 974f0e9..899cb31 100644 --- src/hg/hgLiftOver/hgLiftOver.c +++ src/hg/hgLiftOver/hgLiftOver.c @@ -494,31 +494,30 @@ /* setup output files -- one for converted lines, the other * for lines that could not be mapped */ makeTempName(&mappedTn, HGLFT, ".bed"); makeTempName(&unmappedTn, HGLFT, ".err"); mapped = mustOpen(mappedTn.forCgi, "w"); chmod(mappedTn.forCgi, 0666); unmapped = mustOpen(unmappedTn.forCgi, "w"); chmod(unmappedTn.forCgi, 0666); fromDb = cgiString(HGLFT_FROMDB_VAR); toDb = cgiString(HGLFT_TODB_VAR); chainFile = liftOverChainFile(fromDb, toDb); if (chainFile == NULL) errAbort("ERROR: Can't convert from %s to %s: no chain file loaded", fromDb, toDb); - chainFile = hReplaceGbdbMustDownload(chainFile); readLiftOverMap(chainFile, chainHash); lft = liftOverSniff(oldTn.forCgi); if (lft == bed) ct = liftOverBed(oldTn.forCgi, chainHash, minMatch, minBlocks, 0, minSizeQ, minChainT, 0, fudgeThick, mapped, unmapped, multiple, NULL, &errCt); else if (lft == positions) ct = liftOverPositions(oldTn.forCgi, chainHash, minMatch, minBlocks, 0, minSizeQ, minChainT, 0, fudgeThick, mapped, unmapped, multiple, NULL, &errCt); if (ct == -1) /* programming error */