File Changes for markd

v310_preview2 to v310_base (2014-12-15 to 2015-01-05) v310

• src/hg/hgTracks/retroGene.c
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    added support for transmap V3 which includes source databases in mapped alignment idenitifier
• src/hg/hgTracks/transMapTracks.c
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    added support for transmap V3 which includes source databases in mapped alignment idenitifier
• src/hg/hgc/transMapClick.c
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    added support for transmap V3 which includes source databases in mapped alignment idenitifier
• src/hg/inc/transMapStuff.h
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    added support for transmap V3 which includes source databases in mapped alignment idenitifier
• src/hg/lib/transMapStuff.c
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    added support for transmap V3 which includes source databases in mapped alignment idenitifier
• src/hg/makeDb/doc/ailMel1.txt
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    transmap V3 build
• src/hg/makeDb/doc/allMis1.txt
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    transmap V3 build
• src/hg/makeDb/doc/amaVit1.txt
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    transmap V3 build
• src/hg/makeDb/doc/anoCar2.txt
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    transmap V3 build
• src/hg/makeDb/doc/bosTau8.txt
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    transmap V3 build
• src/hg/makeDb/doc/calJac3.txt
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    transmap V3 build
• src/hg/makeDb/doc/canFam3.txt
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    transmap V3 build
• src/hg/makeDb/doc/cavPor3.txt
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    transmap V3 build
• src/hg/makeDb/doc/cerSim1.txt
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    transmap V3 build
• src/hg/makeDb/doc/chiLan1.txt
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    transmap V3 build
• src/hg/makeDb/doc/choHof1.txt
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    transmap V3 build
• src/hg/makeDb/doc/criGri1.txt
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    transmap V3 build
• src/hg/makeDb/doc/danRer7.txt
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    transmap V3 build
• src/hg/makeDb/doc/dasNov3.txt
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    transmap V3 build
• src/hg/makeDb/doc/dipOrd1.txt
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    transmap V3 build
• src/hg/makeDb/doc/echTel2.txt
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    transmap V3 build
• src/hg/makeDb/doc/equCab2.txt
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    transmap V3 build
• src/hg/makeDb/doc/eriEur2.txt
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    transmap V3 build
• src/hg/makeDb/doc/falPer1.txt
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    transmap V3 build
• src/hg/makeDb/doc/felCat5.txt
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    transmap V3 build
• src/hg/makeDb/doc/fr3.txt
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    transmap V3 build
• src/hg/makeDb/doc/gadMor1.txt
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    transmap V3 build
• src/hg/makeDb/doc/galGal4.txt
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    transmap V3 build
• src/hg/makeDb/doc/gasAcu1.txt
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    transmap V3 build
• src/hg/makeDb/doc/geoFor1.txt
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    transmap V3 build
• src/hg/makeDb/doc/gorGor3.txt
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    transmap V3 build
• src/hg/makeDb/doc/hetGla2.txt
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    transmap V3 build
• src/hg/makeDb/doc/hg19.txt
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    transmap V3 build
• src/hg/makeDb/doc/latCha1.txt
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    transmap V3 build
• src/hg/makeDb/doc/loxAfr3.txt
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    transmap V3 build
• src/hg/makeDb/doc/macEug2.txt
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    transmap V3 build
• src/hg/makeDb/doc/melGal1.txt
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    transmap V3 build
• src/hg/makeDb/doc/melUnd1.txt
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    transmap V3 build
• src/hg/makeDb/doc/micMur1.txt
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    transmap V3 build
• src/hg/makeDb/doc/mm10.txt
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    transmap V3 build
• src/hg/makeDb/doc/mm9.txt
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    transmap V3 build
• src/hg/makeDb/doc/monDom5.txt
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    transmap V3 build
• src/hg/makeDb/doc/musFur1.txt
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    transmap V3 build
• src/hg/makeDb/doc/myoLuc2.txt
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    transmap V3 build
• src/hg/makeDb/doc/nomLeu3.txt
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    transmap V3 build
• src/hg/makeDb/doc/ochPri3.txt
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    transmap V3 build
• src/hg/makeDb/doc/oreNil2.txt
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    transmap V3 build
• src/hg/makeDb/doc/ornAna1.txt
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    transmap V3 build
• src/hg/makeDb/doc/oryCun2.txt
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    transmap V3 build
• src/hg/makeDb/doc/oryLat2.txt
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    transmap V3 build
• src/hg/makeDb/doc/otoGar3.txt
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    transmap V3 build
• src/hg/makeDb/doc/oviAri3.txt
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    transmap V3 build
• src/hg/makeDb/doc/panPan1.txt
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    transmap V3 build
• src/hg/makeDb/doc/panTro4.txt
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    transmap V3 build
• src/hg/makeDb/doc/papAnu2.txt
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    transmap V3 build
• src/hg/makeDb/doc/petMar2.txt
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    transmap V3 build
• src/hg/makeDb/doc/ponAbe2.txt
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    transmap V3 build
• src/hg/makeDb/doc/proCap1.txt
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    transmap V3 build
• src/hg/makeDb/doc/pteVam1.txt
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    transmap V3 build
• src/hg/makeDb/doc/rn5.txt
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    transmap V3 build
• src/hg/makeDb/doc/saiBol1.txt
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    transmap V3 build
• src/hg/makeDb/doc/sarHar1.txt
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    transmap V3 build
• src/hg/makeDb/doc/sorAra2.txt
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    transmap V3 build
• src/hg/makeDb/doc/speTri2.txt
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    transmap V3 build
• src/hg/makeDb/doc/susScr3.txt
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    transmap V3 build
• src/hg/makeDb/doc/taeGut2.txt
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    transmap V3 build
• src/hg/makeDb/doc/tetNig2.txt
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    transmap V3 build
• src/hg/makeDb/doc/transMapTracks.txt
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    transmap V3 build
• src/hg/makeDb/doc/triMan1.txt
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    transmap V3 build
• src/hg/makeDb/doc/tupBel1.txt
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    transmap V3 build
• src/hg/makeDb/doc/turTru2.txt
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    transmap V3 build
• src/hg/makeDb/doc/vicPac2.txt
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    transmap V3 build
• src/hg/makeDb/doc/xenTro7.txt
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    transmap V3 build
• src/hg/makeDb/schema/all.joiner
  • lines changed 148, context: html, text, full: html, text
    added support for transmap V3 which includes source databases in mapped alignment idenitifier
• src/hg/utils/pslMap/pslMap.c
  • lines changed 14, context: html, text, full: html, text
    speed up loading a very number of overlapping chains by pslMap
  • lines changed 9, context: html, text, full: html, text
    fixed bug in previous change to optimize list merge