9f446974e0af9d084bad89f31cd9e3d3f65f6cae max Wed Nov 26 10:17:50 2014 -0800 another edit to beacon makefile, refs #14393 diff --git src/beacon/makefile src/beacon/makefile index 0a5405c..f7e1171 100644 --- src/beacon/makefile +++ src/beacon/makefile @@ -16,41 +16,41 @@ mkdir -p ${CGI_BIN_USER}/beacon rm -f ${CGI_BIN_USER}/beacon/query cp -p query ${CGI_BIN_USER}/beacon/ cp -p accCounts.gdbm ${CGI_BIN_USER}/beacon/ chmod a+w ${CGI_BIN_USER}/beacon/accCounts.gdbm cp -p insdcToUcsc.tab ${CGI_BIN_USER}/beacon/ cp ${BINDIR}/bigBedToBed ${CGI_BIN_USER}/beacon/ cp /hive/data/genomes/hg19/bed/beacon/*.bb ${CGI_BIN_USER}/beacon/ cd ${CGI_BIN_USER}/beacon/ && ln -sf query queryHgmd && ln -sf query queryClinvar && ln -sf query queryLovd && ln -sf query queryUniprot alpha:: pylint -E query mkdir -p ${CGI_BIN}/beacon rm -f ${CGI_BIN}/beacon/query - cp -p query* ${CGI_BIN}/beacon/ + cp -p query ${CGI_BIN}/beacon/ cp -p accCounts.gdbm ${CGI_BIN}/beacon/ chmod a+w ${CGI_BIN}/beacon/accCounts.gdbm cp -p insdcToUcsc.tab ${CGI_BIN}/beacon/ cp ${BINDIR}/bigBedToBed ${CGI_BIN}/beacon/ cp /hive/data/genomes/hg19/bed/beacon/*.bb ${CGI_BIN}/beacon/ cd ${CGI_BIN}/beacon/ && ln -sf query queryHgmd && ln -sf query queryClinvar && ln -sf query queryLovd && ln -sf query queryUniprot beta:: pylint -E query mkdir -p ${CGI_BIN_BETA}/beacon rm -f ${CGI_BIN_BETA}/beacon/query - cp -p query* ${CGI_BIN_BETA}/beacon/ + cp -p query ${CGI_BIN_BETA}/beacon/ cp -p accCounts.gdbm ${CGI_BIN_BETA}/beacon/ chmod a+w ${CGI_BIN_BETA}/beacon/accCounts.gdbm cp -p insdcToUcsc.tab ${CGI_BIN_BETA}/beacon/ # for beta, using the stable binary from /cluster/bin cp /cluster/bin/x86_64/bigBedToBed ${CGI_BIN_BETA}/beacon/ cp /hive/data/genomes/hg19/bed/beacon/*.bb ${CGI_BIN}/beacon/ cd ${CGI_BIN_BETA}/beacon/ && ln -sf query queryHgmd && ln -sf query queryClinvar && ln -sf query queryLovd && ln -sf query queryUniprot clean:: rm -f compile::