Commits for hiram

v310_preview to v310_preview2 (2014-12-08 to 2014-12-15) v310

• build is almost ready to push refs #14412
  • src/hg/makeDb/doc/felCat8/initialBuild.txt - lines changed 486, context: html, text, full: html, text
  • src/hg/makeDb/doc/felCat8/ucscCompositeAgp.pl - lines changed 57, context: html, text, full: html, text
  • src/hg/makeDb/doc/felCat8/ucscToINSDC.sh - lines changed 68, context: html, text, full: html, text
  • src/hg/makeDb/doc/felCat8/unlocalized.pl - lines changed 79, context: html, text, full: html, text
  • src/hg/makeDb/doc/felCat8/unplaced.pl - lines changed 48, context: html, text, full: html, text
• liftOver to felCat8 refs #14412
  • src/hg/makeDb/doc/felCat5.txt - lines changed 21, context: html, text, full: html, text
• add procedure for swap dm6 chain net refs #4049
  • src/hg/makeDb/doc/anoGam1.txt - lines changed 18, context: html, text, full: html, text
  • src/hg/makeDb/doc/droPer1.txt - lines changed 18, context: html, text, full: html, text
  • src/hg/makeDb/doc/droSec1.txt - lines changed 19, context: html, text, full: html, text
  • src/hg/makeDb/doc/droSim1.txt - lines changed 18, context: html, text, full: html, text
• Added tarSyr2 - Tarsier refs #14410
  • src/hg/makeDb/genbank/etc/align.dbs - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/etc/hgwdev.dbs - lines changed 2, context: html, text, full: html, text
• done through genbank runs refs #14410
  • src/hg/makeDb/doc/tarSyr2/initialBuild.txt - lines changed 604, context: html, text, full: html, text
• v78 update complete refs #14462
  • src/hg/makeDb/doc/makeEnsembl.txt - lines changed 1413, context: html, text, full: html, text
• update with better gap definitions refs #14437
  • src/hg/makeDb/trackDb/proboscis/nasLar1/gap.html - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/proboscis/nasLar1/gold.html - lines changed 1, context: html, text, full: html, text
• need to have trackDb.chainNet.insects.ra for trackDb build refs #14437
  • src/hg/utils/automation/makeGenomeDb.pl - lines changed 1, context: html, text, full: html, text
• adding tarSyr2 refs #14410
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra - lines changed 50, context: html, text, full: html, text
• adding chlSab2 refs #11172
  • src/hg/makeDb/trackDb/trackDb.chainNet.primates.ra - lines changed 59, context: html, text, full: html, text
• adding papAnu2 otoGar3 and nomLeu3 refs #14439
  • src/hg/makeDb/trackDb/trackDb.chainNet.primates.ra - lines changed 51, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra - lines changed 101, context: html, text, full: html, text
• catching up with primate chain net packaging refs #10272
  • src/hg/makeDb/trackDb/human/chainNetPrimate.ra - lines changed 68, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/chainNetStray.ra - lines changed 15, context: html, text, full: html, text
• catching up with primate packaging refs #14410
  • src/hg/makeDb/trackDb/human/chainNetTarSyr1.ra - lines changed 15, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/chainNetTarSyr2.ra - lines changed 15, context: html, text, full: html, text
• lastz to equCab2 done correctly refs #14221
  • src/hg/makeDb/doc/bosTau8.txt - lines changed 11, context: html, text, full: html, text