880ad5f5e5b759ac892553985d6ab3721452e870
max
  Thu Dec 11 16:58:34 2014 -0800
largely revamped beacon, refs #14393
diff --git src/beacon/makefile src/beacon/makefile
deleted file mode 100644
index 7881578..0000000
--- src/beacon/makefile
+++ /dev/null
@@ -1,53 +0,0 @@
-include ../inc/common.mk
-
-#cannot use common include rules, don't know how to overwrite :: targets
-#include ../../inc/cgi_build_rules.mk
-
-ifeq (${CGI_BIN_USER},)
-    CGI_BIN_USER=${CGI_BIN}-${USER}
-endif
-
-ifeq (${CGI_BIN_BETA},)
-    CGI_BIN_BETA=${CGI_BIN}-beta
-endif
-
-my::
-	pylint -E query
-	mkdir -p ${CGI_BIN_USER}/beacon
-	rm -f ${CGI_BIN_USER}/beacon/query
-	cp -p query ${CGI_BIN_USER}/beacon/
-	cp -p accCounts.gdbm ${CGI_BIN_USER}/beacon/
-	chmod a+w ${CGI_BIN_USER}/beacon/accCounts.gdbm
-	cp -p insdcToUcsc.tab ${CGI_BIN_USER}/beacon/
-	cp ${BINDIR}/bigBedToBed ${CGI_BIN_USER}/beacon/
-	cd ${CGI_BIN_USER}/beacon/ && ln -sf query queryHgmd && ln -sf query queryClinvar && ln -sf query queryLovd && ln -sf query queryUniprot
-
-
-alpha::
-	pylint -E query
-	mkdir -p ${CGI_BIN}/beacon
-	rm -f ${CGI_BIN}/beacon/query
-	cp -p query ${CGI_BIN}/beacon/
-	cp -p accCounts.gdbm ${CGI_BIN}/beacon/
-	chmod a+w ${CGI_BIN}/beacon/accCounts.gdbm
-	cp -p insdcToUcsc.tab ${CGI_BIN}/beacon/
-	cp ${BINDIR}/bigBedToBed ${CGI_BIN}/beacon/
-	cd ${CGI_BIN}/beacon/ && ln -sf query queryHgmd && ln -sf query queryClinvar && ln -sf query queryLovd && ln -sf query queryUniprot
-
-beta::
-	pylint -E query
-	mkdir -p ${CGI_BIN_BETA}/beacon
-	rm -f ${CGI_BIN_BETA}/beacon/query
-	cp -p query ${CGI_BIN_BETA}/beacon/
-	cp -p accCounts.gdbm ${CGI_BIN_BETA}/beacon/
-	chmod a+w ${CGI_BIN_BETA}/beacon/accCounts.gdbm
-	cp -p insdcToUcsc.tab ${CGI_BIN_BETA}/beacon/
-	# for beta, using the stable binary from /cluster/bin
-	cp /cluster/bin/x86_64/bigBedToBed ${CGI_BIN_BETA}/beacon/
-	cd ${CGI_BIN_BETA}/beacon/ && ln -sf query queryHgmd && ln -sf query queryClinvar && ln -sf query queryLovd && ln -sf query queryUniprot
-
-clean::
-	rm -f 
-
-compile::
-