a2be3b4aee520bfa47602e50b4825b43e9854690 max Thu Dec 11 17:06:43 2014 -0800 small formatting changes in last commit diff --git src/hg/hgBeacon/hgBeacon src/hg/hgBeacon/hgBeacon index ab3e4bc..6e9b759 100755 --- src/hg/hgBeacon/hgBeacon +++ src/hg/hgBeacon/hgBeacon @@ -7,43 +7,43 @@ import cgi, subprocess, sys, cgitb, os, datetime from os.path import join, isfile cgitb.enable() # deactivate this on the RR, but useful for debugging: prints a http header on errors # dir for bigBed files and insdcToUcsc.tab DATADIR = "/gbdb/hg19/beacon" def errAbort(errMsg=None): print "
"
     if errMsg is not None:
         print "error: "+errMsg
 
     host = os.environ.get("HTTP_HOST", "")
 
     print """
-    A Genomics Alliance Beacon at UCSC. In collaboration with the Leiden Open Variation Database.
+    A Genomics Alliance Beacon at UCSC. 
     
-    Data provided by Leiden Open Variation (Ivo Fokkema), Biobase/HGMD.
+    In collaboration with the Leiden Open Variation Database and Biobase/HGMD.
 
     parameters:
     - genome: ignored, always hg19/GRCh37
     - chrom: either a number or X/Y or UCSC format like "chr1" or INSDC
       accession like CM000663.1
     - dataset: either lovd or hgmd. This parameter can also be called "track"
       (backwards compatible)
     - pos: 0-based position, like 10042537
     - allele: A,C,T,G. Ignored for HGMD (HGMD gives out only positions, not the
-      alleles, they are on the website)
+      alleles, they are only on their website)
 
     If the allele was found, returns the string "Yes", otherwise "No".
 
     For HGMD, an overlap with a variant is enough to trigger a "Yes", we don't have the alleles.
     For LOVD, an overlap with a short deletion or duplication returns "Maybe". 
 
     Examples:
     http://%(host)s/cgi-bin/hgBeacon/hgBeacon?dataset=lovd&chrom=chr1&pos=808921&allele=A
     - returns "Yes"
 
     http://%(host)s/cgi-bin/hgBeacon/hgBeacon?dataset=hgmd?chrom=1&pos=2160493&allele=T
     - returns "Maybe", because the allele is in a small deletion
 
     Number of variants:
     - LOVD: 180k, version from Nov 2014