fc955f2e3505d50525040a803f6129311fed042f pauline Fri Jan 23 12:41:12 2015 -0800 Adding credit to Matt and updating to reference bit.ly links. refs #14525 diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html index bef28be..c3c5b0c 100755 --- src/hg/htdocs/indexNews.html +++ src/hg/htdocs/indexNews.html @@ -1,141 +1,140 @@ <!-- News Section ============================================- --> <TABLE WIDTH="100%" BGCOLOR="#888888" BORDER="0" CELLSPACING="0" CELLPADDING="1"> <TR><TD> <TABLE BGCOLOR="#fffee8" WIDTH="100%" BORDER="0" CELLSPACING="0" CELLPADDING="0"> <TR><TD> <TABLE BGCOLOR="#D9E4F8" BACKGROUND="images/hr.gif" WIDTH="100%" BORDER=0> <TR><TD> <!--cheap trick to get background on row to be continuous--> <TABLE CELLPADDING=0 CELLSPACING=0 WIDTH="100%"> <TR><TD ALIGN="left"> <font size="4"><a name="TOC"></a><b> News</b></font><a href="http://www.twitter.com/GenomeBrowser" target="_blank"><img src="http://twitter-badges.s3.amazonaws.com/t_small-a.png" title="Follow @GenomeBrowser on Twitter" alt="Follow @GenomeBrowser on Twitter" style="vertical-align:text-bottom; margin-left: 15px;"></a> <a title="Genome Browser Facebook page" href="http://www.facebook.com/ucscGenomeBrowser" target="_blank"><img src="/images/FB-f-Logo__blue_22.jpg" style="vertical-align:text-bottom; margin-left: 15px;" alt="Genome Browser Facebook page"></a> <a href="https://plus.google.com/107643636314131661344" rel="publisher"></a> </TD> <TD ALIGN="right"><A HREF="goldenPath/newsarch.html"><IMG SRC="images/news.jpg" ALT="" ALIGN="right" BORDER=0></A> </TD></TR></TABLE> </TD></TR></TABLE> <TABLE BGCOLOR="#fffee8" WIDTH="100%" CELLPADDING=0> <TR><TH HEIGHT=3></TH></TR> <TR><TD WIDTH=10></TD> <TD> <P> To receive announcements of new genome assembly releases, new software features, updates and training seminars by email, subscribe to the <A HREF="http://groups.google.com/a/soe.ucsc.edu/group/genome-announce?hl=en" TARGET=_blank>genome-announce</A> mailing list. Please see our <a href="http://genome.ucsc.edu/blog" target=_blank>blog</a> for posts about Genome Browser tools, features, projects and more. </p> <!-- start news --> <hr> <p> <font face="courier" size="3"><b>23 January 2015 - Genome Browser YouTube Channel</b></font> <p>We are pleased to announce the release of the UCSC Genome Browser - <A HREF = "https://www.youtube.com/channel/UCQnUJepyNOw0p8s2otX4RYQ/videos" - TARGET = _BLANK>YouTube channel</A>. The channel contains short videos showing - how to use the Genome Browser and associated tools to solve selected problems. The - videos were produced by Robert Kuhn and Pauline Fujita, with assistance from Luvina - Guruvadoo, Jonathan Casper and the rest of the Browser staff. + <a href="http://bit.ly/genomebrowserYoutube" target=_blank">YouTube channel</a>. + The channel contains short videos showing how to use the Genome Browser and associated + tools to solve selected problems. The videos were produced by Robert Kuhn and Pauline Fujita, + with assistance from Luvina Guruvadoo, Jonathan Casper, Matt Speir and the rest of the Browser staff. </p> - <p>See also the other materials on our <a href = "training/">training page</a>. + <p>See also the other materials on our <a href="http://bit.ly/genomebrowserTraining">training page</a>. </p> <hr> <p> <font face="courier" size="3"><b>15 January 2015 - Proteomics Data Now Available in Genome Browser</b></font> <p> We are pleased to announce the release of proteomics data for the human hg19 assembly. Data from the National Cancer Institute's (NCI) <a href="http://proteomics.cancer.gov/programs/cptacnetwork" target="_blank"> Clinical Proteomic Tumor Analysis Consortium (CPTAC)</a> is now available in the UCSC Genome Browser as a public track hub. This track hub contains peptides that were identified by CPTAC in their deep mass spectrometry based characterization of the proteome content of breast, colorectal and ovarian cancer biospecimens that were initially sequenced by <a href="http://cancergenome.nih.gov/" target="_blank"> The Cancer Genome Atlas</a>. This effort extends the accessibility of CPTAC data to more researchers and provides an additional level of analysis to assist the cancer biology community. <p> To access and view this hub, navigate to the <a href="http://genome.ucsc.edu/cgi-bin/hgHubConnect" target="_blank"> Track Hub gateway page</a> and select "CPTAC Hub v1" from the Public Hubs list. Please direct any queries to the Fenyo Lab at <a href="mailto:info@fenyolab.org">info@fenyolab.org</a>. <p> In addition, we have also released a <a href="http://www.peptideatlas.org/" target="_blank"> PeptideAtlas</a> track which displays peptide identifications from the <a href="https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/buildDetails?atlas_build_id=433" target="_blank"> PeptideAtlas August 2014 (Build 433) Human build</a>. This build, based on 971 samples containing more than 420 million spectra, identified over a million distinct peptides covering more than 15,000 canonical proteins. To read more about this track, please see the <a href="http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=peptideAtlas" target="_blank"> track description page</a>. Many thanks to Eric Deutsch, Zhi Sun, and the PeptideAtlas team at the Institute for Systems Biology, Seattle for providing this data. </p> <hr> <p> <font face="courier" size="3"><b>19 December 2014 - New Cow (bosTau8) Assembly Now Available in the Genome Browser</b></font> <p> We are pleased to announce the release of a Genome Browser for the June 2014 assembly of cow, <i>Bos taurus</i> (Bos_taurus_UMD 3.1.1, UCSC version bosTau8). This updated cow assembly was provided by the <a href="http://www.cbcb.umd.edu/" target="_blank">UMD Center for Bioinformatics and Computational Biology</a> (CBCB). This assembly is an update to the previous UMD 3.1 (bosTau6) assembly. UMD 3.1 contained 138 unlocalized contigs that were found to be contaminants. These have been suppressed in UMD 3.1.1. <p> Bulk downloads of the sequence and annotation data are available via the Genome Browser <a href="ftp://hgdownload.cse.ucsc.edu/goldenPath/bosTau8/">FTP server</a> or the <a href="http://hgdownload.cse.ucsc.edu/downloads.html#cow">Downloads</a> page. These data have <a href="/goldenPath/credits.html#cow_credits">specific conditions for use</a>. The cow browser annotation tracks were generated by UCSC and collaborators worldwide. See the <a href="/goldenPath/credits.html#cow_credits">Credits</a> page for a detailed list of the organizations and individuals who contributed to this release. </p> <hr> <!-- start archives --> <p> <font face="courier" size="3"><b>12 December 2014 - New <i>D. melanogaster</i> (dm6) Assembly Now Available in the Genome Browser: </b></font> We are pleased to announce the release of a Genome Browser for the August 2014 assembly of <i>Drosophila melanogaster</i> (BDGP Release 6, UCSC version dm6). <a href="goldenPath/newsarch.html#121214">Read more</a>. <p> <font face="courier" size="3"><b>29 October 2014 - Genome Browser in a Box (GBiB)</b>:</font> Sometimes you just want to keep your genomics data to yourself. Have you ever hesitated when uploading your data set into the UCSC Genome Browser? If so, you'll be happy to know that we have created a stand-alone personal version: Genome Browser in a Box (GBiB). <a href="goldenPath/newsarch.html#102914">Read more</a>. </p> </TD><TD WIDTH=15> </TD></TR></TABLE> <BR></TD></TR></TABLE> </TD></TR></TABLE>