Commits for hiram

v311_preview to v311_preview2 (2015-01-12 to 2015-01-20) v311

• working up patch2 into a 2bit and AGP file refs #14167
  • src/hg/makeDb/doc/hg38/hg38Patch2.txt - lines changed 145, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg38/regionScan.pl - lines changed 70, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg38/scanAssemblyReport.pl - lines changed 21, context: html, text, full: html, text
• GRCh38 patch 2 almost ready to go refs #14167
  • src/hg/makeDb/doc/hg38/hg38Patch2.txt - lines changed 355, context: html, text, full: html, text
• GRCh38 patch 2 almost ready to go refs #14167
  • src/hg/makeDb/trackDb/human/hg38/hg38Patch2.html - lines changed 65, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/hg38Patch2.ra - lines changed 72, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 2, context: html, text, full: html, text
• update to HTML contents for Patch 2 refs #14167
  • src/hg/makeDb/trackDb/human/hg38/hg38Patch2.html - lines changed 163, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/hg38Patch2.ra - lines changed 1, context: html, text, full: html, text
• adding chain net hg38Patch2 refs #14167
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra - lines changed 50, context: html, text, full: html, text
• PSL table needs to start with altSeqLiftOverPsl to work in hgc clicks refs #14167
  • src/hg/makeDb/trackDb/human/hg38/hg38Patch2.ra - lines changed 33, context: html, text, full: html, text
• v311 preview2 refs #14648
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 3, context: html, text, full: html, text