File Changes for kate

v311_preview to v311_preview2 (2015-01-12 to 2015-01-20) v311

• src/hg/inc/encode/wgEncodeCell.h
  • lines changed 75, context: html, text, full: html, text
    Add ENCODE cell table (wgEncodeCell) support. This contains the more useful info from cv.ra, with additional curation (e.g. summary description)
• src/hg/inc/hui.h
  • lines changed 10, context: html, text, full: html, text
    Set default subtracks on (10 spread across color spectrum, emphasizing ENCODE tier1 and well-known. Additional support for subtrack color on UI. refs #14353
• src/hg/lib/encode/wgEncodeCell.as
  • lines changed 17, context: html, text, full: html, text
    Add ENCODE cell table (wgEncodeCell) support. This contains the more useful info from cv.ra, with additional curation (e.g. summary description)
• src/hg/lib/encode/wgEncodeCell.c
  • lines changed 210, context: html, text, full: html, text
    Add ENCODE cell table (wgEncodeCell) support. This contains the more useful info from cv.ra, with additional curation (e.g. summary description)
• src/hg/lib/encode/wgEncodeCell.sql
  • lines changed 23, context: html, text, full: html, text
    Add ENCODE cell table (wgEncodeCell) support. This contains the more useful info from cv.ra, with additional curation (e.g. summary description)
• src/hg/lib/hui.c
  • lines changed 7, context: html, text, full: html, text
    Remove unused code
  • lines changed 297, context: html, text, full: html, text
    Refactor subtrack table construction (500 line function)
  • lines changed 13, context: html, text, full: html, text
    Suppress annoying 'Top' link at start of subtrack list when matrix not present
  • lines changed 18, context: html, text, full: html, text
    Sortable subtrack list now includes color patch with header. Still needs sorting logic for the column
  • lines changed 18, context: html, text, full: html, text
    Add ability to sort subtracks by color to hgTrackUi. refs #14353.
  • lines changed 14, context: html, text, full: html, text
    Simplify color sorting code, and make trackDb settings more consistent. refs #14353
  • lines changed 11, context: html, text, full: html, text
    Set default subtracks on (10 spread across color spectrum, emphasizing ENCODE tier1 and well-known. Additional support for subtrack color on UI. refs #14353
  • lines changed 41, context: html, text, full: html, text
    Support for computing track priorities by subtrack color in hgTrackDb
  • lines changed 18, context: html, text, full: html, text
    Restore subtrack color feature when no sortable columns. refs #14353
• src/hg/lib/makefile
  • lines changed 1, context: html, text, full: html, text
    Add ENCODE cell table (wgEncodeCell) support. This contains the more useful info from cv.ra, with additional curation (e.g. summary description)
• src/hg/makeDb/doc/hg38/reg.txt
  • lines changed 22, context: html, text, full: html, text
    Add ENCODE cell table (wgEncodeCell) support. This contains the more useful info from cv.ra, with additional curation (e.g. summary description)
• src/hg/makeDb/hgTrackDb/hgTrackDb.c
  • lines changed 1, context: html, text, full: html, text
    Set default subtracks on (10 spread across color spectrum, emphasizing ENCODE tier1 and well-known. Additional support for subtrack color on UI. refs #14353
• src/hg/makeDb/outside/uwDnaseTrackHub/uwDnaseTrackHub.c
  • lines changed 219, context: html, text, full: html, text
    Add option to use cell descriptions in table to construct long labels
• src/hg/makeDb/trackDb/human/hg38/uwDnase.ra
  • lines changed 1165, context: html, text, full: html, text
    Add ENCODE cell table (wgEncodeCell) support. This contains the more useful info from cv.ra, with additional curation (e.g. summary description)
  • lines changed 8, context: html, text, full: html, text
    Fix typos
  • lines changed 8, context: html, text, full: html, text
    Fix typos
  • lines changed 4, context: html, text, full: html, text
    Simplify color sorting code, and make trackDb settings more consistent. refs #14353
  • lines changed 48, context: html, text, full: html, text
    Set default subtracks on (10 spread across color spectrum, emphasizing ENCODE tier1 and well-known. Additional support for subtrack color on UI. refs #14353
  • lines changed 1, context: html, text, full: html, text
    Tweak order of UI subtrack columns. refs #14353