File Changes for braney

v312_preview2 to v312_base (2015-02-09 to 2015-02-16) v312

• src/hg/checkTableCoords/checkTableCoords.c
  • lines changed 1, context: html, text, full: html, text
    fix checkTableCoords to actually set the exit code if it finds errors
    
• src/hg/checkTableCoords/tests/makefile
  • lines changed 1, context: html, text, full: html, text
    don't output error message on error that is supposed to occur
    
• src/hg/inc/spDb.h
  • lines changed 8, context: html, text, full: html, text
    some modifications to support the GENCODE as UCSC genes switch
    
• src/hg/lib/spDb.c
  • lines changed 16, context: html, text, full: html, text
    some modifications to support the GENCODE as UCSC genes switch
    
• src/hg/makeDb/doc/hg38/hg38.txt
  • lines changed 9, context: html, text, full: html, text
    add the instructions to build a lift file to convert dbVar hg38 chrom
    names to our chrom names
    
• src/hg/makeDb/doc/ucscGenes/hg38.ucscGenes16.csh
  • lines changed 945, context: html, text, full: html, text
    more futzing around building UCSC genes from Gencode
    
• src/hg/makeDb/trackDb/human/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    update the ISCA link-out to point to the right place
    
• src/hg/txGene/txGeneAlias/txGeneAlias.c
  • lines changed 2, context: html, text, full: html, text
    some modifications to support the GENCODE as UCSC genes switch
    
• src/hg/utils/gencodeToKnownGene/gencodeToKnownGene.c
  • lines changed 403, context: html, text, full: html, text
    introductory work on program to create knownGene tables from gencode
    tables
    
• src/hg/utils/gencodeToKnownGene/makefile
  • lines changed 3, context: html, text, full: html, text
    introductory work on program to create knownGene tables from gencode
    tables