See also the other materials on our training page.
If you have any comments or questions - including requests for future video topics - please send them to our training group at:
ucscgbtraining@soe. ucsc. edu
- 15 January 2015 - - Proteomics Data Now Available in Genome Browser -
- We are pleased to announce the release of proteomics data for the - human hg19 assembly. Data from the National Cancer Institute's (NCI) - - Clinical Proteomic Tumor Analysis Consortium (CPTAC) is now available - in the UCSC Genome Browser as a public track hub. This track hub - contains peptides that were identified by CPTAC in their deep mass - spectrometry based characterization of the proteome content of - breast, colorectal and ovarian cancer biospecimens that were initially - sequenced by - The Cancer Genome Atlas. This effort extends the - accessibility of CPTAC data to more researchers and provides an - additional level of analysis to assist the cancer biology community. -
- To access and view this hub, navigate to the - - Track Hub gateway page and select "CPTAC Hub v1" from the Public Hubs list. - Please direct any queries to the Fenyo Lab at info@fenyolab.org. -
- In addition, we have also released a - PeptideAtlas track which displays peptide identifications from the - - PeptideAtlas August 2014 (Build 433) Human build. This build, based on 971 samples containing more than 420 - million spectra, identified over a million distinct peptides covering - more than 15,000 canonical proteins. To read more about this track, - please see the - track description page. Many thanks to Eric Deutsch, - Zhi Sun, and the PeptideAtlas team at the Institute for Systems Biology, - Seattle for providing this data. -
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