e06f948148a909b5e617dfaff5f9c50064223e80 jcasper Thu Feb 12 11:54:25 2015 -0800 Forgot to remove main proteomics announcement when I activated the short version diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html index ab1bac0..aec0ae7 100755 --- src/hg/htdocs/indexNews.html +++ src/hg/htdocs/indexNews.html @@ -104,65 +104,30 @@ <p>See also the other materials on our <a href="http://bit.ly/genomebrowserTraining">training page</a>. </p> <p>If you have any comments or questions - including requests for future video topics - please send them to our training group at: </p> <p> ucscgbtraining@soe. ucsc. edu <!-- above address is ucscgbtraining at soe ucsc edu --> </p> <hr> - <p> - <font face="courier" size="3"><b>15 January 2015 - - Proteomics Data Now Available in Genome Browser</b></font> - <p> - We are pleased to announce the release of proteomics data for the - human hg19 assembly. Data from the National Cancer Institute's (NCI) - <a href="http://proteomics.cancer.gov/programs/cptacnetwork" target="_blank"> - Clinical Proteomic Tumor Analysis Consortium (CPTAC)</a> is now available - in the UCSC Genome Browser as a public track hub. This track hub - contains peptides that were identified by CPTAC in their deep mass - spectrometry based characterization of the proteome content of - breast, colorectal and ovarian cancer biospecimens that were initially - sequenced by <a href="http://cancergenome.nih.gov/" target="_blank"> - The Cancer Genome Atlas</a>. This effort extends the - accessibility of CPTAC data to more researchers and provides an - additional level of analysis to assist the cancer biology community. - <p> - To access and view this hub, navigate to the - <a href="http://genome.ucsc.edu/cgi-bin/hgHubConnect" target="_blank"> - Track Hub gateway page</a> and select "CPTAC Hub v1" from the Public Hubs list. - Please direct any queries to the Fenyo Lab at <a href="mailto:info@fenyolab.org">info@fenyolab.org</a>. - <p> - In addition, we have also released a <a href="http://www.peptideatlas.org/" target="_blank"> - PeptideAtlas</a> track which displays peptide identifications from the - <a href="https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/buildDetails?atlas_build_id=433" target="_blank"> - PeptideAtlas August 2014 (Build 433) Human build</a>. This build, based on 971 samples containing more than 420 - million spectra, identified over a million distinct peptides covering - more than 15,000 canonical proteins. To read more about this track, - please see the <a href="http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=peptideAtlas" target="_blank"> - track description page</a>. Many thanks to Eric Deutsch, - Zhi Sun, and the PeptideAtlas team at the Institute for Systems Biology, - Seattle for providing this data. - </p> - - <hr> <!-- start archives --> <!-- <p> <font face="courier" size="3"><b>11 February 2015 - dbSNP 142 Available for hg19 and hg38</b></font> We are pleased to announce the release of four tracks derived from NCBI <a href="http://www.ncbi.nlm.nih.gov/SNP/" target="_blank">dbSNP</a> Build 142 data, available on the two most recent human assemblies GRCh37/hg19 and GRCh38/hg38. The new tracks contain a substantial amount of additional annotation data not included in previous dbSNP tracks, with corresponding coloring and filtering options in the Genome Browser. <a href="goldenPath/newsarch.html#021115">Read more</a>. </p> <p>