874c24c932ee906b6332b5df5b6f4e1c93bf8b92
markd
  Mon Feb 9 22:15:49 2015 -0800
Created a program to filter genePreds file.  Currently filters
based on genePredCheck validation errors.

diff --git src/hg/utils/makefile src/hg/utils/makefile
index aac4323..6cef42f 100644
--- src/hg/utils/makefile
+++ src/hg/utils/makefile
@@ -15,30 +15,31 @@
   buildRefresh=
 else
   buildRefresh=refreshNamedSessionCustomTracks
 endif
 
 # List of directories to build for userApps
 UTILS_APPLIST = \
 	bedExtendRanges \
 	bedToPsl \
 	bedWeedOverlapping \
 	chromGraphFromBin \
 	chromGraphToBin \
 	crTreeIndexBed \
 	crTreeSearchBed \
 	gapToLift \
+	genePredFilter \
 	gff3ToGenePred \
 	gff3ToPsl \
 	gtfToGenePred \
 	hubCheck \
 	hubPublicCheck \
 	makeTableList \
 	oligoMatch \
 	overlapSelect \
 	positionalTblCheck \
 	pslMap \
 	tdbQuery \
 	twoBitMask
 
 SCRIPT_FILES = \
 	dbNsfpToBed.pl \
@@ -48,30 +49,31 @@
 
 # List of directories to build of interest only at UCSC
 DIRS = ${buildRefresh} \
 	automation \
 	checkUrlsInTable \
 	geoMirrorNode \
 	makeTrackIndex \
 	mysqlSecurityCheck \
 	pslUniq \
 	refSeqGet \
 	safePush \
 	toDev64 \
 	wigBedToStep
 
 TEST_DIRS = \
+	genePredFilter \
 	gff3ToGenePred \
 	gff3ToPsl \
 	gtfToGenePred \
 	overlapSelect \
 	pslMap \
 	refSeqGet
 
 APPS = $(DIRS) $(UTILS_APPLIST)
 
 all:: utils
 
 utils: $(APPS:%=%.utils)
 %.utils:
 	cd $* && echo $* && $(MAKE)